Evidence map›Paper›PMID 26288819›Full record

ArticleEBioMedicine2015

Characterization of Somatic Mutations in Air Pollution-Related Lung Cancer.

Xian-Jun Yu, Min-Jun Yang, Bo Zhou, Gui-Zhen Wang, Yun-Chao Huang, Li-Chuan Wu, Xin Cheng, Zhe-Sheng Wen, Jin-Yan Huang, Yun-Dong Zhang and 23 more

Open access · goldAbstract read
In one paragraph

Article in EBioMedicine, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 98 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Review
  5. Review
  6. Article
  7. Air Pollutants in Puerto Rico: Key Pollutants and Carcinogenic Properties.International journal of environmental research and public health · 2025
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. The mutagenic forces shaping the genomic landscape of lung cancer in never smokers.medRxiv : the preprint server for health sciences · 2024
    Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

33 authors at 10 institutions in 2 countries.

Xian-Jun YuState Key Laboratory of Biomembrane and Membrane Biotechnology, Institute of Zoology, Chinese Academy of Sciences & University of Chinese Academy of Sciences, Beijing 100101, China ; School of Life Sciences, University of Science and Technology of China, Hefei 230026, China.
Min-Jun YangThe Shanghai-MOST Key Laboratory of Health and Disease Genomics, Chinese National Human Genome Center, Shanghai 201203, China.
Bo ZhouState Key Laboratory of Biomembrane and Membrane Biotechnology, Institute of Zoology, Chinese Academy of Sciences & University of Chinese Academy of Sciences, Beijing 100101, China.
Gui-Zhen WangState Key Laboratory of Biomembrane and Membrane Biotechnology, Institute of Zoology, Chinese Academy of Sciences & University of Chinese Academy of Sciences, Beijing 100101, China.
Yun-Chao HuangDepartment of Thoracic Surgery, Yunnan Cancer Hospital, Kunming 650106, China.
Li-Chuan WuState Key Laboratory of Biomembrane and Membrane Biotechnology, Institute of Zoology, Chinese Academy of Sciences & University of Chinese Academy of Sciences, Beijing 100101, China.
Xin ChengState Key Laboratory of Biomembrane and Membrane Biotechnology, Institute of Zoology, Chinese Academy of Sciences & University of Chinese Academy of Sciences, Beijing 100101, China.
Zhe-Sheng WenDepartment of Thoracic Surgery, The Cancer Hospital, Sun Yat-Sen University, Guangzhou 510060, China.
Jin-Yan HuangState Key Laboratory of Medical Genomics, Shanghai Institute of Hematology, Rui Jin Hospital Affiliated to Shanghai Jiao Tong University (SJTU) School of Medicine, and Shanghai Center for Systems Biomedicine, SJTU, Shanghai 200025, China.
Yun-Dong ZhangLaboratory of Molecular and Experimental Pathology, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China.
Xiao-Hong GaoState Key Laboratory of Biomembrane and Membrane Biotechnology, Institute of Zoology, Chinese Academy of Sciences & University of Chinese Academy of Sciences, Beijing 100101, China.
Gao-Feng LiDepartment of Thoracic Surgery, Yunnan Cancer Hospital, Kunming 650106, China.
Shui-Wang HeLaboratory of Molecular and Experimental Pathology, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China ; School of Life Sciences, University of Science and Technology of China, Hefei 230026, China.
Zhao-Hui GuState Key Laboratory of Medical Genomics, Shanghai Institute of Hematology, Rui Jin Hospital Affiliated to Shanghai Jiao Tong University (SJTU) School of Medicine, and Shanghai Center for Systems Biomedicine, SJTU, Shanghai 200025, China.
Liang MaState Key Laboratory of Biomembrane and Membrane Biotechnology, Institute of Zoology, Chinese Academy of Sciences & University of Chinese Academy of Sciences, Beijing 100101, China.
Chun-Ming PanState Key Laboratory of Medical Genomics, Shanghai Institute of Hematology, Rui Jin Hospital Affiliated to Shanghai Jiao Tong University (SJTU) School of Medicine, and Shanghai Center for Systems Biomedicine, SJTU, Shanghai 200025, China.
Ping WangDepartment of Thoracic Surgery, The First People's Hospital of Yunnan Province, Kunming 650032, China.
Hao-Bin ChenDepartment of Pathology, The First People's Hospital of Qu Jing City, Qu Jing 655000, Yunnan Province, China.
Zhi-Peng HongDepartment of Thoracic Surgery, The First Affiliated Hospital of Kunming Medical University, Kunming 650032, China.
Xiao-Lu WangState Key Laboratory of Biomembrane and Membrane Biotechnology, Institute of Zoology, Chinese Academy of Sciences & University of Chinese Academy of Sciences, Beijing 100101, China.
Wen-Jing MaoState Key Laboratory of Biomembrane and Membrane Biotechnology, Institute of Zoology, Chinese Academy of Sciences & University of Chinese Academy of Sciences, Beijing 100101, China ; School of Life Sciences, University of Science and Technology of China, Hefei 230026, China.
Xiao-Long JinDepartment of Pathology, Rui Jin Hospital Affiliated to SJTU School of Medicine, Shanghai 200025, China.
Hui KangThe Shanghai-MOST Key Laboratory of Health and Disease Genomics, Chinese National Human Genome Center, Shanghai 201203, China.
Shu-Ting ChenThe Shanghai-MOST Key Laboratory of Health and Disease Genomics, Chinese National Human Genome Center, Shanghai 201203, China.
Yong-Qiang ZhuThe Shanghai-MOST Key Laboratory of Health and Disease Genomics, Chinese National Human Genome Center, Shanghai 201203, China.
Wen-Yi GuThe Shanghai-MOST Key Laboratory of Health and Disease Genomics, Chinese National Human Genome Center, Shanghai 201203, China.
Zi LiuState Key Laboratory of Biomembrane and Membrane Biotechnology, Institute of Zoology, Chinese Academy of Sciences & University of Chinese Academy of Sciences, Beijing 100101, China.
Hui DongThe Shanghai-MOST Key Laboratory of Health and Disease Genomics, Chinese National Human Genome Center, Shanghai 201203, China.
Lin-Wei TianSchool of Public Health, The University of Hong Kong, Hong Kong SAR, China.
Sai-Juan ChenState Key Laboratory of Medical Genomics, Shanghai Institute of Hematology, Rui Jin Hospital Affiliated to Shanghai Jiao Tong University (SJTU) School of Medicine, and Shanghai Center for Systems Biomedicine, SJTU, Shanghai 200025, China.
Yi CaoLaboratory of Molecular and Experimental Pathology, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China.
Sheng-Yue WangThe Shanghai-MOST Key Laboratory of Health and Disease Genomics, Chinese National Human Genome Center, Shanghai 201203, China.
Guang-Biao ZhouState Key Laboratory of Biomembrane and Membrane Biotechnology, Institute of Zoology, Chinese Academy of Sciences & University of Chinese Academy of Sciences, Beijing 100101, China.
University of Chinese Academy of Sciences · CNChinese National Human Genome Center · CNShanghai Jiao Tong University · CNUniversity of Science and Technology of China · CNKunming Institute of Zoology · CNFirst People's Hospital of Jingzhou · CNFirst People's Hospital of Yunnan Province · CNKunming Medical University · CNShanghai Institute of Hematology · CNUniversity of Hong Kong · HK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Air pollution has been classified as Group 1 carcinogenic to humans, but the underlying tumorigenesis remains unclear. In Xuanwei City of Yunnan Province, the lung cancer incidence is among the highest in China attributed to severe air pollution generated by combustion of smoky coal, providing a unique opportunity to dissect lung carcinogenesis of air pollution. Here we analyzed the somatic mutations of 164 non-small cell lung cancers (NSCLCs) from Xuanwei and control regions (CR) where smoky coal was not used. Whole genome sequencing revealed a mean of 289 somatic exonic mutations per tumor and the frequent C:G → A:T nucleotide substitutions in Xuanwei NSCLCs. Exome sequencing of 2010 genes showed that Xuanwei and CR NSCLCs had a mean of 68 and 22 mutated genes per tumor, respectively (p < 0.0001). We found 167 genes (including TP53, RYR2, KRAS, CACNA1E) which had significantly higher mutation frequencies in Xuanwei than CR patients, and mutations in most genes in Xuanwei NSCLCs differed from those in CR cases. The mutation rates of 70 genes (e.g., RYR2, MYH3, GPR144, CACNA1E) were associated with patients' lifetime benzo(a)pyrene exposure. This study uncovers the mutation spectrum of air pollution-related lung cancers, and provides evidence for pollution exposure-genomic mutation relationship at a large scale.

Indexed as

AgedAir PollutantsAir PollutionBase SequenceBenzo(a)pyreneCarcinoma, Non-Small-Cell LungCell Transformation, NeoplasticCoalEnvironmental ExposureFemaleGene FrequencyGenomeHumansLung NeoplasmsMaleMiddle AgedAir PollutantsBenzo(a)pyreneCoalSmokeAir pollutionExome sequencingExposureLung cancerWhole genome sequencing

Identifiers

PMID26288819
PMCPMC4534757
OpenAlexW2059304296

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.