Evidence map›Paper›PMID 26287632›Full record

ArticleBiophysical journal2015

Protein Conformational Changes Are Detected and Resolved Site Specifically by Second-Harmonic Generation.

Ben Moree, Katelyn Connell, Richard B Mortensen, C Tony Liu, Stephen J Benkovic, Joshua Salafsky

Open access · hybridAbstract read
In one paragraph

Article in Biophysical journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
5.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Second harmonic generation detection of Ras conformational changes and discovery of a small molecule binder.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Ben MoreeBiodesy, Inc., South San Francisco, California.
Katelyn ConnellBiodesy, Inc., South San Francisco, California.
Richard B MortensenBiodesy, Inc., South San Francisco, California.
C Tony LiuDepartment of Chemistry, Pennsylvania State University, University Park, Pennsylvania.
Stephen J BenkovicDepartment of Chemistry, Pennsylvania State University, University Park, Pennsylvania.
Joshua SalafskyBiodesy, Inc., South San Francisco, California. Electronic address: joshua.salafsky@biodesy.com.
Pennsylvania State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We present here a straightforward, broadly applicable technique for real-time detection and measurement of protein conformational changes in solution. This method is based on tethering proteins labeled with a second-harmonic generation (SHG) active dye to supported lipid bilayers. We demonstrate our method by measuring the conformational changes that occur upon ligand binding with three well-characterized proteins labeled at lysine residues: calmodulin (CaM), maltose-binding protein (MBP), and dihydrofolate reductase (DHFR). We also create a single-site cysteine mutant of DHFR engineered within the Met20 catalytic loop region and study the protein's structural motion at this site. Using published x-ray crystal structures, we show that the changes in the SHG signals upon ligand binding are the result of structural motions that occur at the labeled sites between the apo and ligand-bound forms of the proteins, which are easily distinguished from each other. In addition, we demonstrate that different magnitudes of the SHG signal changes are due to different and specific ligand-induced conformational changes. Taken together, these data illustrate the potential of the SHG approach for detecting and measuring protein conformational changes for a wide range of biological applications.

Indexed as

Protein ConformationCalmodulinChromatography, LiquidEscherichia coliEscherichia coli ProteinsLipid BilayersMaltose-Binding ProteinsModels, MolecularMotionMutationOptical ImagingSolutionsTandem Mass SpectrometryTetrahydrofolate DehydrogenaseCalmodulinEscherichia coli ProteinsLipid BilayersMaltose-Binding ProteinsSolutionsTetrahydrofolate Dehydrogenase

Identifiers

PMID26287632
PMCPMC4547196
OpenAlexW1958905309

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.