Evidence map›Paper›PMID 26287606›Full record

ArticlePloS one2015

Multiplex-PCR-Based Screening and Computational Modeling of Virulence Factors and T-Cell Mediated Immunity in Helicobacter pylori Infections for Accurate Clinical Diagnosis.

Sinem Oktem-Okullu, Arzu Tiftikci, Murat Saruc, Bahattin Cicek, Eser Vardareli, Nurdan Tozun, Tanil Kocagoz, Ugur Sezerman, Ahmet Sinan Yavuz, Ayca Sayi-Yazgan

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.6field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 14 citations in OpenAlex.

  1. The Effect ofPathogens (Basel, Switzerland) · 2025
    Article
  2. Review
  3. Article
  4. Analysis of Correlation between the Seven ImportantGastroenterology research and practice · 2020
    Article
  5. Low Rate ofJournal of clinical and diagnostic research : JCDR · 2017
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Sinem Oktem-OkulluDepartment of Molecular Biology and Genetics, Istanbul Technical University, Maslak, Istanbul, Turkey; Department of Medical Microbiology, School of Medicine, Acibadem University, Atasehir, Istanbul, Turkey.
Arzu TiftikciDepartment of Internal Medicine, School of Medicine, Acibadem University, Atasehir, Istanbul, Turkey; Department of Gastroenterology, Acibadem Hospital Group, Istanbul, Turkey.
Murat SarucDepartment of Internal Medicine, School of Medicine, Acibadem University, Atasehir, Istanbul, Turkey; Department of Gastroenterology, Acibadem Hospital Group, Istanbul, Turkey.
Bahattin CicekDepartment of Internal Medicine, School of Medicine, Acibadem University, Atasehir, Istanbul, Turkey; Department of Gastroenterology, Acibadem Hospital Group, Istanbul, Turkey.
Eser VardareliDepartment of Internal Medicine, School of Medicine, Acibadem University, Atasehir, Istanbul, Turkey; Department of Gastroenterology, Acibadem Hospital Group, Istanbul, Turkey.
Nurdan TozunDepartment of Internal Medicine, School of Medicine, Acibadem University, Atasehir, Istanbul, Turkey; Department of Gastroenterology, Acibadem Hospital Group, Istanbul, Turkey.
Tanil KocagozDepartment of Medical Microbiology, School of Medicine, Acibadem University, Atasehir, Istanbul, Turkey.
Ugur SezermanDepartment of Biostatistics and Medical Informatics, School of Medicine, Acibadem University, Atasehir, Istanbul, Turkey.
Ahmet Sinan YavuzMolecular Biology, Genetics and Bioengineering Program, Faculty of Engineering and Natural Sciences, Sabancı University, Tuzla, Istanbul, Turkey.
Ayca Sayi-YazganDepartment of Molecular Biology and Genetics, Istanbul Technical University, Maslak, Istanbul, Turkey.
Acıbadem University · TRIstanbul Technical University · TRSabancı Üniversitesi · TR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The outcome of H. pylori infection is closely related with bacteria's virulence factors and host immune response. The association between T cells and H. pylori infection has been identified, but the effects of the nine major H. pylori specific virulence factors; cagA, vacA, oipA, babA, hpaA, napA, dupA, ureA, ureB on T cell response in H. pylori infected patients have not been fully elucidated. We developed a multiplex- PCR assay to detect nine H. pylori virulence genes with in a three PCR reactions. Also, the expression levels of Th1, Th17 and Treg cell specific cytokines and transcription factors were detected by using qRT-PCR assays. Furthermore, a novel expert derived model is developed to identify set of factors and rules that can distinguish the ulcer patients from gastritis patients. Within all virulence factors that we tested, we identified a correlation between the presence of napA virulence gene and ulcer disease as a first data. Additionally, a positive correlation between the H. pylori dupA virulence factor and IFN-γ, and H. pylori babA virulence factor and IL-17 was detected in gastritis and ulcer patients respectively. By using computer-based models, clinical outcomes of a patients infected with H. pylori can be predicted by screening the patient's H. pylori vacA m1/m2, ureA and cagA status and IFN-γ (Th1), IL-17 (Th17), and FOXP3 (Treg) expression levels. Herein, we report, for the first time, the relationship between H. pylori virulence factors and host immune responses for diagnostic prediction of gastric diseases using computer-based models.

Indexed as

Helicobacter pyloriBacterial ProteinsComputer SimulationDiagnosis, Computer-AssistedExpert SystemsGastritisGenes, BacterialHelicobacter InfectionsHost-Pathogen InteractionsHumansImmunity, CellularMultiplex Polymerase Chain ReactionT-Lymphocyte SubsetsVirulence FactorsBacterial ProteinsVirulence Factors

Identifiers

PMID26287606
PMCPMC4545411
OpenAlexW2143591090

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.