Evidence map›Paper›PMID 26287535›Full record

ArticlePloS one2015

Western Blotting Inaccuracies with Unverified Antibodies: Need for a Western Blotting Minimal Reporting Standard (WBMRS).

Jennifer E Gilda, Rajeshwary Ghosh, Jenice X Cheah, Toni M West, Sue C Bodine, Aldrin V Gomes

Open access · goldAbstract readValidation Study
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed, 1 pooled it
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 1 synthesis or guideline pooled it, 105 citations in OpenAlex.

  1. Guidelines for authors and reviewers on antibody use in physiology studies.American journal of physiology. Heart and circulatory physiology · 2018
    Guideline
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. SUMO Antibody Validation.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Guidelines on antibody use in physiology research.American journal of physiology. Renal physiology · 2024
    Article
  16. Top-down proteomics.Nature reviews. Methods primers · 2024
    Article
  17. Comprehensive Optimization of Western Blotting.Gels (Basel, Switzerland) · 2023
    Article
  18. Article
  19. Aflatoxin BInternational journal of molecular sciences · 2023
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Jennifer E GildaDepartment of Neurobiology, Physiology, and Behavior, University of California Davis, Davis, CA, United States of America.
Rajeshwary GhoshDepartment of Neurobiology, Physiology, and Behavior, University of California Davis, Davis, CA, United States of America.
Jenice X CheahDepartment of Neurobiology, Physiology, and Behavior, University of California Davis, Davis, CA, United States of America.
Toni M WestDepartment of Pharmacology, University of California Davis, Davis, CA, United States of America.
Sue C BodineDepartment of Neurobiology, Physiology, and Behavior, University of California Davis, Davis, CA, United States of America; Department of Physiology and Membrane Biology, University of California Davis, Davis, CA, United States of America.
Aldrin V GomesDepartment of Neurobiology, Physiology, and Behavior, University of California Davis, Davis, CA, United States of America; Department of Physiology and Membrane Biology, University of California Davis, Davis, CA, United States of America.
University of California, Davis · US

Funding

Program AdministrationP01HL080101 · NHLBI · UNIVERSITY OF CALIFORNIA AT DAVIS · PI BERS, DONALD M · 2006 to 2015
$23.4M
The Role of the Proteasome in Troponin related CardiomyopathiesR01HL096819 · NHLBI · UNIVERSITY OF CALIFORNIA AT DAVIS · PI GOMES, ALDRIN V. · 2010 to 2014
$1.9M
NHLBI NIH HHS HL080101NHLBI NIH HHS HL096819NHLBI NIH HHS P01 HL080101NHLBI NIH HHS R01 HL096819RRD VA I01 RX000673
6 · The paper itself

Abstract

Western blotting is a commonly used technique in biological research. A major problem with Western blotting is not the method itself, but the use of poor quality antibodies as well as the use of different experimental conditions that affect the linearity and sensitivity of the Western blot. Investigation of some conditions that are commonly used and often modified in Western blotting, as well as some commercial antibodies, showed that published articles often fail to report critical parameters needed to reproduce the results. These parameters include the amount of protein loaded, the blocking solution and conditions used, the amount of primary and secondary antibodies used, the antibody incubation solutions, the detection method and the quantification method utilized. In the present study, comparison of ubiquitinated proteins in rat heart and liver samples showed different results depending on the antibody utilized. Validation of five commercial ubiquitin antibodies using purified ubiquitinated proteins, ubiquitin chains and free ubiquitin showed that these antibodies differ in their ability to detect free ubiquitin or ubiquitinated proteins. Investigating proteins modified with interferon-stimulated gene 15 (ISG15) in young and old rat hearts using six commercially available antibodies showed that most antibodies gave different semi-quantitative results, suggesting large variability among antibodies. Evidence showing the importance of the Western blot buffer and the concentration of antibody used is presented. Hence there is a critical need for comprehensive reporting of experimental conditions to improve the accuracy and reproducibility of Western blot analysis. A Western blotting minimal reporting standard (WBMRS) is suggested to improve the reproducibility of Western blot analysis.

Indexed as

AnimalsAntibodiesBlotting, WesternCell LineCytokinesMaleMiceMyocardiumRatsRats, Inbred F344Reproducibility of ResultsUbiquitinUbiquitinsAntibodiesCytokinesISG15 protein, ratUbiquitinUbiquitins

Identifiers

PMID26287535
PMCPMC4545415
OpenAlexW1856873384

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.