Evidence map›Paper›PMID 26287232›Full record

ReviewViruses2015

Flaviviral Replication Complex: Coordination between RNA Synthesis and 5'-RNA Capping.

Valerie J Klema, Radhakrishnan Padmanabhan, Kyung H Choi

Abstract readReview
In one paragraph

Review in Viruses, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 96 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
96citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

96 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Zika Virus Infection in Pregnant Women and Microcephaly.Revista brasileira de ginecologia e obstetricia : revista da Federacao Brasileira das Sociedades de Ginecologia e Obstetricia · 2017
    Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Zika NS2B Protein: In Vitro Formation of Large Multimeric Networks.International journal of molecular sciences · 2026
    Article
  13. Review
  14. AlphaFold Prediction of Protein-Protein Interactions in theInternational journal of molecular sciences · 2025
    Article
  15. Article
  16. Article
  17. Article
  18. Comparative analysis of duck Tembusu virus Cluster 1 and Cluster 2.1 inCurrent research in parasitology & vector-borne diseases · 2025
    Article
  19. Article
  20. West Nile virus unmasked: from gene variability to future challenges.Frontiers in cellular and infection microbiology · 2025
    Review

36 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Valerie J KlemaDepartment of Biochemistry and Molecular Biology, Sealy Center for Structural Biology and Molecular Biophysics, University of Texas Medical Branch at Galveston, Galveston, TX 77555-0647, USA. vaklema@utmb.edu.
Radhakrishnan PadmanabhanDepartment of Microbiology and Immunology, Georgetown University School of Medicine, Washington, DC 20057, USA. rp55@georgetown.edu.
Kyung H ChoiDepartment of Biochemistry and Molecular Biology, Sealy Center for Structural Biology and Molecular Biophysics, University of Texas Medical Branch at Galveston, Galveston, TX 77555-0647, USA. kychoi@utmb.edu.

Funding

MECHANISM OF RNA SYNTHESIS BY DENGUE VIRUS NS5R01AI087856 · NIAID · UNIVERSITY OF TEXAS MED BR GALVESTON · PI Kyung H Choi · 2011 to 2026
$5.5M
Inhibiting protein-primed replication of human enteroviruses.R21AI105985 · NIAID · FOUNDATION FOR APPLIED MOLECULAR EVOLUTN · PI SCHEIN, CATHERINE H · 2013 to 2014
$442k
NIAID NIH HHS AI087856NIAID NIH HHS AI105985NIAID NIH HHS R01 AI087856NIAID NIH HHS R21 AI105985
6 · The paper itself

Abstract

Genome replication in flavivirus requires (-) strand RNA synthesis, (+) strand RNA synthesis, and 51-RNA capping and methylation. To carry out viral genome replication, flavivirus assembles a replication complex, consisting of both viral and host proteins, on the cytoplasmic side of the endoplasmic reticulum (ER) membrane. Two major components of the replication complex are the viral non-structural (NS) proteins NS3 and NS5. Together they possess all the enzymatic activities required for genome replication, yet how these activities are coordinated during genome replication is not clear. We provide an overview of the flaviviral genome replication process, the membrane-bound replication complex, and recent crystal structures of full-length NS5. We propose a model of how NS3 and NS5 coordinate their activities in the individual steps of (-) RNA synthesis, (+) RNA synthesis, and 51-RNA capping and methylation.

Indexed as

Virus ReplicationDEAD-box RNA HelicasesFlavivirusGene Expression Regulation, ViralHumansNucleoside-TriphosphataseRNA CapsRNA HelicasesRNA, ViralSerine EndopeptidasesViral Nonstructural ProteinsViral ProteasesDEAD-box RNA HelicasesNS3 protein, flavivirusNS5 protein, flavivirusNucleoside-TriphosphataseRNA CapsRNA HelicasesRNA, ViralSerine EndopeptidasesViral Nonstructural ProteinsViral Proteases51-RNA cappingflavivirusNS3NS5RNA-dependent RNA polymeraseRNA synthesisviral replication complex

Identifiers

PMID26287232
PMCPMC4576198

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.