Evidence map›Paper›PMID 26286963›Full record

ArticleOncotarget2015

Redox process is crucial for inhibitory properties of aurintricarboxylic acid against activity of YopH: virulence factor of Yersinia pestis.

Alicja Kuban-Jankowska, Kamlesh K Sahu, Pawel Niedzialkowski, Magdalena Gorska, Jack A Tuszynski, Tadeusz Ossowski, Michal Wozniak

Abstract read
In one paragraph

Article in Oncotarget, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Alicja Kuban-JankowskaDepartment of Medical Chemistry, Medical University of Gdansk, Gdansk, Poland.
Kamlesh K SahuDepartment of Physics, University of Alberta, Edmonton, Canada.
Pawel NiedzialkowskiDepartment of Analytical Chemistry, Faculty of Chemistry, University of Gdansk, Gdansk, Poland.
Magdalena GorskaDepartment of Medical Chemistry, Medical University of Gdansk, Gdansk, Poland.
Jack A TuszynskiDepartment of Physics, University of Alberta, Edmonton, Canada.
Tadeusz OssowskiDepartment of Analytical Chemistry, Faculty of Chemistry, University of Gdansk, Gdansk, Poland.
Michal WozniakDepartment of Medical Chemistry, Medical University of Gdansk, Gdansk, Poland.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

YopH is a bacterial protein tyrosine phosphatase, which is essential for the viability and pathogenic virulence of the plague-causing Yersinia sp. bacteria. Inactivation of YopH activity would lead to the loss of bacterial pathogenicity. We have studied the inhibitory properties of aurintricarboxylic acid (ATA) against YopH phosphatase and found that at nanomolar concentrations ATA reversibly decreases the activity of YopH. Computational docking studies indicated that in all binding poses ATA binds in the YopH active site. Molecular dynamics simulations showed that in the predicted binding pose, ATA binds to the essential Cys403 and Arg409 residues in the active site and has a stronger binding affinity than the natural substrate (pTyr). The cyclic voltammetry experiments suggest that ATA reacts remarkably strongly with molecular oxygen. Additionally, the electrochemical reduction of ATA in the presence of a negative potential from -2.0 to 2.5 V generates a current signal, which is observed for hydrogen peroxide. Here we showed that ATA indicates a unique mechanism of YopH inactivation due to a redox process. We proposed that the potent inhibitory properties of ATA are a result of its strong binding in the YopH active site and in situ generation of hydrogen peroxide near catalytic cysteine residue.

Indexed as

AlgorithmsAurintricarboxylic AcidBacterial Outer Membrane ProteinsHumansKineticsMolecular ConformationMolecular Dynamics SimulationMolecular StructureOxidation-ReductionPlagueProtein BindingProtein Structure, TertiaryProtein Tyrosine PhosphatasesVirulenceVirulence FactorsYersinia pestisAurintricarboxylic AcidBacterial Outer Membrane ProteinsProtein Tyrosine PhosphatasesVirulence FactorsyopH protein, YersiniaATA (aurintricarboxylic acid)oxygen reduction/oxidationPathology Sectionprotein tyrosine phosphatase inhibitorvirulence factor inhibitionYopH

Identifiers

PMID26286963
PMCPMC4621896

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.