Evidence map›Paper›PMID 26286751›Full record

ArticleThe Journal of biological chemistry2015

Site-directed Mutagenesis Shows the Significance of Interactions with Phospholipids and the G-protein OsYchF1 for the Physiological Functions of the Rice GTPase-activating Protein 1 (OsGAP1).

Yuk-Lin Yung, Ming-Yan Cheung, Rui Miao, Yu-Hang Fong, Kwan-Pok Li, Mei-Hui Yu, Mee-Len Chye, Kam-Bo Wong, Hon-Ming Lam

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.3field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. International journal of molecular sciences · 2023
    Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. ATP binding by the P-loop NTPase OsYchF1 (an unconventional G protein) contributes to biotic but not abiotic stress responses.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Yuk-Lin YungFrom the School of Life Sciences, Centre for Soybean Research of the Partner State Key Laboratory of Agrobiotechnology, and.
Ming-Yan CheungFrom the School of Life Sciences, Centre for Soybean Research of the Partner State Key Laboratory of Agrobiotechnology, and.
Rui MiaoFrom the School of Life Sciences, Centre for Soybean Research of the Partner State Key Laboratory of Agrobiotechnology, and the School of Biological Sciences, University of Hong Kong, Pokfulam, Hong Kong, China.
Yu-Hang FongFrom the School of Life Sciences, Center for Protein Sciences and Crystallography, The Chinese University of Hong Kong, Shatin, N.T., Hong Kong, China and.
Kwan-Pok LiFrom the School of Life Sciences, Centre for Soybean Research of the Partner State Key Laboratory of Agrobiotechnology, and.
Mei-Hui YuFrom the School of Life Sciences, Centre for Soybean Research of the Partner State Key Laboratory of Agrobiotechnology, and.
Mee-Len Chyethe School of Biological Sciences, University of Hong Kong, Pokfulam, Hong Kong, China.
Kam-Bo WongFrom the School of Life Sciences, Center for Protein Sciences and Crystallography, The Chinese University of Hong Kong, Shatin, N.T., Hong Kong, China and.
Hon-Ming LamFrom the School of Life Sciences, Centre for Soybean Research of the Partner State Key Laboratory of Agrobiotechnology, and honming@cuhk.edu.hk.
Chinese University of Hong Kong · CNUniversity of Hong Kong · HK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The C2 domain is one of the most diverse phospholipid-binding domains mediating cellular signaling. One group of C2-domain proteins are plant-specific and are characterized by their small sizes and simple structures. We have previously reported that a member of this group, OsGAP1, is able to alleviate salt stress and stimulate defense responses, and bind to both phospholipids and an unconventional G-protein, OsYchF1. Here we solved the crystal structure of OsGAP1 to a resolution of 1.63 Å. Using site-directed mutagenesis, we successfully differentiated between the clusters of surface residues that are required for binding to phospholipids versus OsYchF1, which, in turn, is critical for its role in stimulating defense responses. On the other hand, the ability to alleviate salt stress by OsGAP1 is dependent only on its ability to bind OsYchF1 and is independent of its phospholipid-binding activity.

Indexed as

Mutagenesis, Site-DirectedCrystallography, X-RayOryzaPhospholipidsPlant ProteinsProtein Structure, Tertiaryras GTPase-Activating ProteinsPhospholipidsPlant Proteinsras GTPase-Activating Proteinscrystal structureG proteinphospholipidplant defenseplasma membrane

Identifiers

PMID26286751
PMCPMC4583037
OpenAlexW1482444532

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.