Evidence map›Paper›PMID 26286599›Full record

ArticleBMC medical genetics2015

Adjusting heterogeneous ascertainment bias for genetic association analysis with extended families.

Suyeon Park, Sungyoung Lee, Young Lee, Christine Herold, Basavaraj Hooli, Kristina Mullin, Taesung Park, Changsoon Park, Lars Bertram, Christoph Lange and 2 more

Abstract read
In one paragraph

Article in BMC medical genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Suyeon ParkDepartment of Applied Statistics, Chung-Ang University, Seoul, Korea. sooyeon1002@gamil.com.
Sungyoung LeeInterdisciplinary Program in Bioinformatics, Seoul National University, Seoul, Korea. biznok@gmail.com.
Young LeeDepartment of Applied Statistics, Chung-Ang University, Seoul, Korea. lyou7688@gmail.com.
Christine HeroldGerman Center for Neurodegenerative Diseases (DZNE), Sigmund-Freud-Str. 25, Bonn, 53127, Germany. christine.herold@dzne.de.
Basavaraj HooliGenetics and Aging Research Unit, MassGeneral Institute for Neurodegenerative Diseases, Department of Neurology, Massachusetts General Hospital, Harvard Medical School, Massachusetts, USA. bhooli@helix.mgh.harvard.edu.
Kristina MullinGenetics and Aging Research Unit, MassGeneral Institute for Neurodegenerative Diseases, Department of Neurology, Massachusetts General Hospital, Harvard Medical School, Massachusetts, USA. kmullin1@mgh.harvard.edu.
Taesung ParkDepartment of Statistics, Seoul National University, Seoul, Korea. tspark@snu.ac.kr.
Changsoon ParkDepartment of Applied Statistics, Chung-Ang University, Seoul, Korea. cspark@cau.ac.kr.
Lars BertramGenetics and Aging Research Unit, MassGeneral Institute for Neurodegenerative Diseases, Department of Neurology, Massachusetts General Hospital, Harvard Medical School, Massachusetts, USA. lars.bertram@uni-luebeck.de.
Christoph LangeDepartment of Biostatistics, Harvard School of Public Health, Boston, MA, USA. clange@hsph.harvard.edu.
Rudolph TanziGenetics and Aging Research Unit, MassGeneral Institute for Neurodegenerative Diseases, Department of Neurology, Massachusetts General Hospital, Harvard Medical School, Massachusetts, USA. rtanzi@mgh.harvard.edu.
Sungho WonDepartment of Public Health Science, Seoul National University, Seoul, Korea. won1@snu.ac.kr.

Funding

National Centralized Repository for Alzheimer's Disease and Related Dementias (NCRAD)U24AG021886 · NIA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI TATIANA M. FOROUD · 2002 to 2026
$119.8M
THE ROLE OF ADVANCED CAA IN ALZHEIMER'S DEMENTIAP50AG005134 · NIA · MASSACHUSETTS GENERAL HOSPITAL · PI GOMEZ-ISLA, TERESA · 1985 to 2018
$42.1M
SEARCH FOR NOVEL ALZHEIMERS DISEASE GENESR01MH060009 · NIMH · MASSACHUSETTS GENERAL HOSPITAL · PI TANZI, RUDOLPH EMILE · 1999 to 2017
$5.4M
NIA NIH HHS P50 AG005134NIA NIH HHS U24 AG021886NIMH NIH HHS R01 2R01MH060009
6 · The paper itself

Abstract

backgroundIn family-based association analysis, each family is typically ascertained from a single proband, which renders the effects of ascertainment bias heterogeneous among family members. This is contrary to case-control studies, and may introduce sample or ascertainment bias. Statistical efficiency is affected by ascertainment bias, and careful adjustment can lead to substantial improvements in statistical power. However, genetic association analysis has often been conducted using family-based designs, without addressing the fact that each proband in a family has had a great influence on the probability for each family member to be affected.

methodWe propose a powerful and efficient statistic for genetic association analysis that considered the heterogeneity of ascertainment bias among family members, under the assumption that both prevalence and heritability of disease are available. With extensive simulation studies, we showed that the proposed method performed better than the existing methods, particularly for diseases with large heritability.

resultsWe applied the proposed method to the genome-wide association analysis of Alzheimer's disease. Four significant associations with the proposed method were found.

conclusionOur significant findings illustrated the practical importance of this new analysis method.

Indexed as

FamilyGenetic HeterogeneitySelection BiasAlzheimer DiseaseComputer SimulationData Interpretation, StatisticalGene FrequencyGenetic Association StudiesHumans

Identifiers

PMID26286599
PMCPMC4593209

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.