ArticleThe Plant cell2015
Lost in Translation: Pitfalls in Deciphering Plant Alternative Splicing Transcripts.
Article in The Plant cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
21 citing papers in PubMed.
- Article
- Catsnap: a user-friendly algorithm for determining the conservation of protein variants reveals extensive parallelisms in the evolution of alternative splicing.The New phytologist · 2023Article
- Comparative Analysis of Environment-Responsive Alternative Splicing in the Inflorescences of Cultivated and Wild Tomato Species.International journal of molecular sciences · 2022Article
- BaRTv2: a highly resolved barley reference transcriptome for accurate transcript-specific RNA-seq quantification.The Plant journal : for cell and molecular biology · 2022Article
- How alternative splicing changes the properties of plant proteins.Quantitative plant biology · 2022Review
- Alternative splicing diversifies the transcriptome and proteome of the rice blast fungus during host infection.RNA biology · 2022Article
- An alternative splicing variant of PtRD26 delays leaf senescence by regulating multiple NAC transcription factors in Populus.The Plant cell · 2021Article
- Daily temperature cycles promote alternative splicing of RNAs encoding SR45a, a splicing regulator in maize.Plant physiology · 2021Article
- Prevalence of alternative AUG and non-AUG translation initiators and their regulatory effects across plants.Genome research · 2020Article
- Distinct Evolutionary Origins of Intron Retention Splicing Events inFrontiers in plant science · 2020Article
- Alternative Splicing and DNA Damage Response in Plants.Frontiers in plant science · 2020Review
- Editorial: Alternative Splicing Regulation in Plants.Frontiers in plant science · 2020Article
- Analysis of differential gene expression and alternative splicing is significantly influenced by choice of reference genome.RNA (New York, N.Y.) · 2019Article
- Alternative Splicing Plays a Critical Role in Maintaining Mineral Nutrient Homeostasis in Rice (The Plant cell · 2018Article
- The loss of SMG1 causes defects in quality control pathways in Physcomitrella patens.Nucleic acids research · 2018Article
- Abiotic Stresses Modulate Landscape of Poplar Transcriptome via Alternative Splicing, Differential Intron Retention, and Isoform Ratio Switching.Frontiers in plant science · 2018Article
- Alternative splicing shapes transcriptome but not proteome diversity in Physcomitrella patens.Scientific reports · 2017Article
- A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing.Nucleic acids research · 2017Article
- Herboxidiene triggers splicing repression and abiotic stress responses in plants.BMC genomics · 2017Article
- Response of Gene Expression and Alternative Splicing to Distinct Growth Environments in Tomato.International journal of molecular sciences · 2017Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
6 authors.
Funding
Abstract
Transcript annotation in plant databases is incomplete and often inaccurate, leading to misinterpretation. As more and more RNA-seq data are generated, plant scientists need to be aware of potential pitfalls and understand the nature and impact of specific alternative splicing transcripts on protein production. A primary area of concern and the topic of this article is the (mis)annotation of open reading frames and premature termination codons. The basic message is that to adequately address expression and functions of transcript isoforms, it is necessary to be able to predict their fate in terms of whether protein isoforms are generated or specific transcripts are unproductive or degraded.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.