Evidence map›Paper›PMID 26285676›Full record

ReviewNature reviews. Molecular cell biology2015

Transcriptome-wide dynamics of RNA pseudouridylation.

John Karijolich, Chengqi Yi, Yi-Tao Yu

Abstract readReview
In one paragraph

Review in Nature reviews. Molecular cell biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 106 papers.

0numbers the graph read from it
0cells of the map it votes in
106citing papers in PubMed
6.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

106 citing papers in PubMed, 155 citations in OpenAlex.

  1. Article
  2. Review
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  4. Article
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  6. Review
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  9. Review
  10. Review
  11. Advances in RNA modification in myocardial fibrosis (Review).International journal of molecular medicine · 2025
    Review
  12. Article
  13. Review
  14. Review
  15. Functions and therapeutic applications of pseudouridylation.Nature reviews. Molecular cell biology · 2025
    Review
  16. Epitranscriptomic alterations induced by environmental toxins: implications for RNA modifications and disease.Genes and environment : the official journal of the Japanese Environmental Mutagen Society · 2025
    Review
  17. Review
  18. Review
  19. The zebrafish (NAR genomics and bioinformatics · 2025
    Article
  20. Article

46 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 2 countries.

John KarijolichDepartment of Plant and Microbial Biology, University of California, 565 Li Ka Shing Center #3370, Berkeley, California 94720-337, USA.
Chengqi YiState Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Synthetic and Functional Biomolecules Center and Peking-Tsinghua Center for Life Sciences, Peking University, 5 Summer Palace Road, Haidian District, Beijing 100871, China.
Yi-Tao YuDepartment of Biochemistry and Biophysics, University of Rochester Medical Center, School of Medicine and Dentistry, 601 Elmwood Avenue, Box 712 Rochester, New York 14642, USA.
Peking University · CNUniversity of California, Berkeley · USUniversity of Rochester Medical Center · US

Funding

Expanding the genetic code by targeted pseudouridylationR01GM104077 · NIGMS · UNIVERSITY OF ROCHESTER · PI YU, YI-TAO · 2012 to 2015
$1.2M
Regulation of telomerase activity and aging by 2'-O-methylation in telomerase RNAR21AG039559 · NIA · UNIVERSITY OF ROCHESTER · PI YU, YI-TAO · 2012 to 2013
$412k
NIA NIH HHS R21 AG039559NIGMS NIH HHS R01 GM104077
6 · The paper itself

Abstract

Pseudouridylation is the most abundant internal post-transcriptional modification of stable RNAs, with fundamental roles in the biogenesis and function of spliceosomal small nuclear RNAs (snRNAs) and ribosomal RNAs (rRNAs). Recently, the first transcriptome-wide maps of RNA pseudouridylation were published, greatly expanding the catalogue of known pseudouridylated RNAs. These data have further implicated RNA pseudouridylation in the cellular stress response and, moreover, have established that mRNAs are also targets of pseudouridine synthases, potentially representing a novel mechanism for expanding the complexity of the cellular proteome.

Indexed as

AnimalsHumansPseudouridineRNA, RibosomalRNA, Small NuclearTranscriptomePseudouridineRNA, RibosomalRNA, Small Nuclear

Identifiers

PMID26285676
PMCPMC5694666
OpenAlexW1190321151

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.