Evidence map›Paper›PMID 26284101›Full record

ArticleFrontiers in plant science2015

Long-term boron-deficiency-responsive genes revealed by cDNA-AFLP differ between Citrus sinensis roots and leaves.

Yi-Bin Lu, Yi-Ping Qi, Lin-Tong Yang, Jinwook Lee, Peng Guo, Xin Ye, Meng-Yang Jia, Mei-Li Li, Li-Song Chen

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.6field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Plants (Basel, Switzerland) · 2021
    Review
  7. Article
  8. Article
  9. Boron Toxicity and Deficiency in Agricultural Plants.International journal of molecular sciences · 2020
    Review
  10. Article
  11. Magnesium Deficiency Induced Global Transcriptome Change inInternational journal of molecular sciences · 2019
    Article
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Yi-Bin LuDepartment of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University Fuzhou, China ; Institute of Horticultural Plant Physiology, Biochemistry, and Molecular Biology, Fujian Agriculture and Forestry University Fuzhou, China.
Yi-Ping QiInstitute of Materia Medica, Fujian Academy of Medical Sciences Fuzhou, China.
Lin-Tong YangDepartment of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University Fuzhou, China ; Institute of Horticultural Plant Physiology, Biochemistry, and Molecular Biology, Fujian Agriculture and Forestry University Fuzhou, China.
Jinwook LeeDepartment of Horticultural Science, Kyungpook National University Daegu, South Korea.
Peng GuoDepartment of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University Fuzhou, China ; Institute of Horticultural Plant Physiology, Biochemistry, and Molecular Biology, Fujian Agriculture and Forestry University Fuzhou, China.
Xin YeDepartment of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University Fuzhou, China ; Institute of Horticultural Plant Physiology, Biochemistry, and Molecular Biology, Fujian Agriculture and Forestry University Fuzhou, China.
Meng-Yang JiaDepartment of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University Fuzhou, China.
Mei-Li LiDepartment of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University Fuzhou, China.
Li-Song ChenDepartment of Resource and Environment, College of Resource and Environmental Science, Fujian Agriculture and Forestry University Fuzhou, China ; Institute of Horticultural Plant Physiology, Biochemistry, and Molecular Biology, Fujian Agriculture and Forestry University Fuzhou, China ; The Higher Educational Key Laboratory of Fujian Province for Soil Ecosystem Health and Regulation, Fujian Agriculture and Forestry University Fuzhou, China.
Fujian Agriculture and Forestry University · CNFujian Academy of Medical Sciences · CNKyungpook National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Seedlings of Citrus sinensis (L.) Osbeck were supplied with boron (B)-deficient (without H3BO3) or -sufficient (10 μM H3BO3) nutrient solution for 15 weeks. We identified 54 (38) and 38 (45) up (down)-regulated cDNA-AFLP bands (transcript-derived fragments, TDFs) from B-deficient leaves and roots, respectively. These TDFs were mainly involved in protein and amino acid metabolism, carbohydrate and energy metabolism, nucleic acid metabolism, cell transport, signal transduction, and stress response and defense. The majority of the differentially expressed TDFs were isolated only from B-deficient roots or leaves, only seven TDFs with the same GenBank ID were isolated from the both. In addition, ATP biosynthesis-related TDFs were induced in B-deficient roots, but unaffected in B-deficient leaves. Most of the differentially expressed TDFs associated with signal transduction and stress defense were down-regulated in roots, but up-regulated in leaves. TDFs related to protein ubiquitination and proteolysis were induced in B-deficient leaves except for one TDF, while only two down-regulated TDFs associated with ubiquitination were detected in B-deficient roots. Thus, many differences existed in long-term B-deficiency-responsive genes between roots and leaves. In conclusion, our findings provided a global picture of the differential responses occurring in B-deficient roots and leaves and revealed new insight into the different adaptive mechanisms of C. sinensis roots and leaves to B-deficiency at the transcriptional level.

Indexed as

boron-deficiencycDNA-AFLPCitrus sinensisleavesrootstranscript-derived fragment

Identifiers

PMID26284101
PMCPMC4517394
OpenAlexW1481306555

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.