Evidence map›Paper›PMID 26284087›Full record

ArticleFrontiers in plant science2015

Functional properties and structural characterization of rice δ(1)-pyrroline-5-carboxylate reductase.

Giuseppe Forlani, Michele Bertazzini, Marco Zarattini, Dietmar Funck, Milosz Ruszkowski, Bogusław Nocek

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.6field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Measurement of δMetabolites · 2025
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  5. Functional Characterization ofMicroorganisms · 2022
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  6. Review
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  8. Peculiar substrate specificity of δMolecular biology reports · 2021
    Article
  9. A Wild Allele ofFrontiers in plant science · 2021
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  10. Enzymology and Regulation of δFrontiers in plant science · 2021
    Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Functional Characterization of Four Putative δFrontiers in microbiology · 2017
    Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Giuseppe ForlaniLaboratory of Plant Physiology and Biochemistry, Department of Life Science and Biotechnology, University of Ferrara Ferrara, Italy.
Michele BertazziniLaboratory of Plant Physiology and Biochemistry, Department of Life Science and Biotechnology, University of Ferrara Ferrara, Italy ; Plant Physiology and Biochemistry, Department of Biology, University of Konstanz Konstanz, Germany.
Marco ZarattiniLaboratory of Plant Physiology and Biochemistry, Department of Life Science and Biotechnology, University of Ferrara Ferrara, Italy.
Dietmar FunckPlant Physiology and Biochemistry, Department of Biology, University of Konstanz Konstanz, Germany.
Milosz RuszkowskiSynchrotron Radiation Research Section, Macromolecular Crystallography Laboratory, National Cancer Institute, Argonne National Laboratory, Argonne IL, USA.
Bogusław NocekBiosciences Division, Argonne National Laboratory, Argonne IL, USA.
Argonne National Laboratory · USUniversity of Ferrara · ITUniversity of Konstanz · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The majority of plant species accumulate high intracellular levels of proline to cope with hyperosmotic stress conditions. Proline synthesis from glutamate is tightly regulated at both the transcriptional and the translational levels, yet little is known about the mechanisms for post-translational regulation of the enzymatic activities involved. The gene coding in rice (Oryza sativa L.) for δ(1)-pyrroline-5-carboxylate (P5C) reductase, the enzyme that catalyzes the second and final step in this pathway, was isolated and expressed in Escherichia coli. The structural and functional properties of the affinity-purified protein were characterized. As for most species, rice P5C reductase was able to use in vitro either NADH or NADPH as the electron donor. However, strikingly different effects of cations and anions were found depending on the pyridine nucleotide used, namely inhibition of NADH-dependent activity and stimulation of NADPH-dependent activity. Moreover, physiological concentrations of proline and NADP(+) were strongly inhibitory for the NADH-dependent reaction, whereas the NADPH-dependent activity was mildly affected. Our results suggest that only NADPH may be used in vivo and that stress-dependent variations in ion homeostasis and NADPH/NADP(+) ratio could modulate enzyme activity, being functional in promoting proline accumulation and potentially also adjusting NADPH consumption during the defense against hyperosmotic stress. The apparent molecular weight of the native protein observed in size exclusion chromatography indicated a high oligomerization state. We also report the first crystal structure of a plant P5C reductase at 3.40-Å resolution, showing a decameric quaternary assembly. Based on the structure, it was possible to identify dynamic structural differences among rice, human, and bacterial enzymes.

Indexed as

cation and anion effectsenzyme propertiesoligomeric structureP5C reductaseproduct inhibitionproline synthesissubstrate ambiguity

Identifiers

PMID26284087
PMCPMC4517315
OpenAlexW1589147476

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.