Evidence map›Paper›PMID 26283385›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Confounding effects of oxygen and temperature on the TEX86 signature of marine Thaumarchaeota.

Wei Qin, Laura T Carlson, E Virginia Armbrust, Allan H Devol, James W Moffett, David A Stahl, Anitra E Ingalls

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
12.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 190 citations in OpenAlex.

  1. Ocean warming enhances iron use efficiencies of marine ammonia-oxidizing archaea.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  7. Millennial-timescale thermogenic CONature communications · 2025
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  11. Frontiers in microbiology · 2023
    Article
  12. Archaeal lipids trace ecology and evolution of marine ammonia-oxidizing archaea.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  13. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Wei QinDepartment of Civil and Environmental Engineering, University of Washington, Seattle, WA 98195;
Laura T CarlsonSchool of Oceanography, University of Washington, Seattle, WA 98195;
E Virginia ArmbrustSchool of Oceanography, University of Washington, Seattle, WA 98195;
Allan H DevolSchool of Oceanography, University of Washington, Seattle, WA 98195;
James W MoffettDepartment of Biological Sciences, University of Southern California, Los Angeles, CA 90089.
David A StahlDepartment of Civil and Environmental Engineering, University of Washington, Seattle, WA 98195; dastahl@u.washington.edu aingalls@uw.edu.
Anitra E IngallsSchool of Oceanography, University of Washington, Seattle, WA 98195; dastahl@u.washington.edu aingalls@uw.edu.
University of Washington · USUniversity of Southern California · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Marine ammonia-oxidizing archaea (AOA) are among the most abundant of marine microorganisms, spanning nearly the entire water column of diverse oceanic provinces. Historical patterns of abundance are preserved in sediments in the form of their distinctive glycerol dibiphytanyl glycerol tetraether (GDGT) membrane lipids. The correlation between the composition of GDGTs in surface sediment and the overlying annual average sea surface temperature forms the basis for a paleotemperature proxy (TEX86) that is used to reconstruct surface ocean temperature as far back as the Middle Jurassic. However, mounting evidence suggests that factors other than temperature could also play an important role in determining GDGT distributions. We here use a study set of four marine AOA isolates to demonstrate that these closely related strains generate different TEX86-temperature relationships and that oxygen (O2) concentration is at least as important as temperature in controlling TEX86 values in culture. All of the four strains characterized showed a unique membrane compositional response to temperature, with TEX86-inferred temperatures varying as much as 12 °C from the incubation temperatures. In addition, both linear and nonlinear TEX86-temperature relationships were characteristic of individual strains. Increasing relative abundance of GDGT-2 and GDGT-3 with increasing O2 limitation, at the expense of GDGT-1, led to significant elevations in TEX86-derived temperature. Although the adaptive significance of GDGT compositional changes in response to both temperature and O2 is unclear, this observation necessitates a reassessment of archaeal lipid-based paleotemperature proxies, particularly in records that span low-oxygen events or underlie oxygen minimum zones.

Indexed as

Marine BiologyTemperatureAmmoniaArchaeaConfounding Factors, EpidemiologicOxygenAmmoniaOxygenGDGToxygentemperatureTEX86Thaumarchaeota

Identifiers

PMID26283385
PMCPMC4568219
OpenAlexW2137306226

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.