Evidence map›Paper›PMID 26283381›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

MutL traps MutS at a DNA mismatch.

Ruoyi Qiu, Miho Sakato, Elizabeth J Sacho, Hunter Wilkins, Xingdong Zhang, Paul Modrich, Manju M Hingorani, Dorothy A Erie, Keith R Weninger

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 67 citations in OpenAlex.

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  17. The selection process of licensing a DNA mismatch for repair.Nature structural & molecular biology · 2021
    Article
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  20. Recurrent mismatch binding by MutS mobile clamps on DNA localizes repair complexes nearby.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Ruoyi QiuDepartment of Physics, North Carolina State University, Raleigh, NC 27695;
Miho SakatoMolecular Biology and Biochemistry Department, Wesleyan University, Middletown, CT 06459;
Elizabeth J SachoDepartment of Physics, North Carolina State University, Raleigh, NC 27695;
Hunter WilkinsDepartment of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599;
Xingdong ZhangDepartment of Biochemistry, Duke University Medical Center, Durham, NC 27710;
Paul ModrichDepartment of Biochemistry, Duke University Medical Center, Durham, NC 27710; Howard Hughes Medical Institute, Duke University Medical Center, Durham, NC 27710;
Manju M HingoraniMolecular Biology and Biochemistry Department, Wesleyan University, Middletown, CT 06459;
Dorothy A ErieDepartment of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599; Curriculum in Applied Sciences and Engineering, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599 keith_weninger@ncsu.edu derie@unc.edu.
Keith R WeningerDepartment of Physics, North Carolina State University, Raleigh, NC 27695; keith_weninger@ncsu.edu derie@unc.edu.
North Carolina State University · USDuke University Hospital · USUniversity of North Carolina at Chapel Hill · USWesleyan University · US

Funding

Enzymology Of Eukaryotic Mismatch RepairR01GM045190 · NIGMS · DUKE UNIVERSITY · PI MODRICH, PAUL LAWRENCE · 1991 to 2018
$6.8M
Structure Function Studies of DNA Mismatch RepairR01GM079480 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ERIE, DOROTHY A · 2007 to 2017
$2.7M
Quantitative analysis of transient DNA repair processes in vivoR01GM109832 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BRUSTAD, ERIC MICHAEL, ERIE, DOROTHY A · 2014 to 2017
$1.0M
Mechanistic studies of DNA repair and damage responseR01GM080294 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ERIE, DOROTHY A · 2009 to 2010
$565k
Howard Hughes Medical InstituteNIGMS NIH HHS GM045190NIGMS NIH HHS GM079480NIGMS NIH HHS GM080294NIGMS NIH HHS GM109832NIGMS NIH HHS R01 GM045190NIGMS NIH HHS R01 GM079480NIGMS NIH HHS R01 GM080294NIGMS NIH HHS R01 GM109832
6 · The paper itself

Abstract

DNA mismatch repair (MMR) identifies and corrects errors made during replication. In all organisms except those expressing MutH, interactions between a DNA mismatch, MutS, MutL, and the replication processivity factor (β-clamp or PCNA) activate the latent MutL endonuclease to nick the error-containing daughter strand. This nick provides an entry point for downstream repair proteins. Despite the well-established significance of strand-specific nicking in MMR, the mechanism(s) by which MutS and MutL assemble on mismatch DNA to allow the subsequent activation of MutL's endonuclease activity by β-clamp/PCNA remains elusive. In both prokaryotes and eukaryotes, MutS homologs undergo conformational changes to a mobile clamp state that can move away from the mismatch. However, the function of this MutS mobile clamp is unknown. Furthermore, whether the interaction with MutL leads to a mobile MutS-MutL complex or a mismatch-localized complex is hotly debated. We used single molecule FRET to determine that Thermus aquaticus MutL traps MutS at a DNA mismatch after recognition but before its conversion to a sliding clamp. Rather than a clamp, a conformationally dynamic protein assembly typically containing more MutL than MutS is formed at the mismatch. This complex provides a local marker where interaction with β-clamp/PCNA could distinguish parent/daughter strand identity. Our finding that MutL fundamentally changes MutS actions following mismatch detection reframes current thinking on MMR signaling processes critical for genomic stability.

Indexed as

Base Pair MismatchBacterial ProteinsGenes, BacterialThermusBacterial ProteinsDNA mismatch repairFRETMutLMutS

Identifiers

PMID26283381
PMCPMC4568282
OpenAlexW1924084608

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.