Evidence map›Paper›PMID 26283046›Full record

ArticleJournal of experimental botany2015

Polypyrimidine tract-binding proteins of potato mediate tuberization through an interaction with StBEL5 RNA.

Sung Ki Cho, Pooja Sharma, Nathaniel M Butler, Il-Ho Kang, Shweta Shah, A Gururaj Rao, David J Hannapel

Open access · hybridAbstract read
In one paragraph

Article in Journal of experimental botany, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
12.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 81 citations in OpenAlex.

  1. Review
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  5. Review
  6. Genome Editing by Grafting.International journal of molecular sciences · 2025
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  12. Long-Distance Movement ofPlants (Basel, Switzerland) · 2023
    Article
  13. Review
  14. Article
  15. Article
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  17. Review
  18. Article
  19. Rootstocks OverexpressingInternational journal of molecular sciences · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Sung Ki ChoPlant Biology Major, Iowa State University, Ames, IA 50011-1100, USA.
Pooja SharmaPlant Biology Major, Iowa State University, Ames, IA 50011-1100, USA.
Nathaniel M ButlerPlant Biology Major, Iowa State University, Ames, IA 50011-1100, USA.
Il-Ho KangPlant Biology Major, Iowa State University, Ames, IA 50011-1100, USA.
Shweta ShahDepartment of Biochemistry, Biophysics and Molecular Biology, Iowa State University, Ames, IA 50011, USA.
A Gururaj RaoDepartment of Biochemistry, Biophysics and Molecular Biology, Iowa State University, Ames, IA 50011, USA.
David J HannapelPlant Biology Major, Iowa State University, Ames, IA 50011-1100, USA djh@iastate.edu.
Iowa State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Polypyrimidine tract-binding (PTB) proteins are a family of RNA-binding proteins that function in a wide range of RNA metabolic processes by binding to motifs rich in uracils and cytosines. A PTB protein of pumpkin was identified as the core protein of an RNA-protein complex that trafficks RNA. The biological function of the PTB-RNA complex, however, has not been demonstrated. In potato, six PTB proteins have been identified, and two, designated StPTB1 and StPTB6, are similar to the phloem-mobile pumpkin type. RNA binding assays confirmed the interaction of StPTB1 and StPTB6 with discrete pyrimidine-rich sequences of the 3'-untranslated regions of the phloem-mobile mRNA, StBEL5. The promoter of StPTB1 was active in companion cells of phloem in both stem and petioles. Expression of both types was evident in phloem cells of roots and in stolons during tuber formation. RNA accumulation of both PTB proteins was induced by short days in leaves in correlation with enhanced accumulation of StBEL5 RNA. StPTB suppression lines exhibited reduced tuber yields and decreased StBEL5 RNA accumulation, whereas StPTB overexpression lines displayed an increase in tuber production correlated with the enhanced production in stolons of steady-state levels of StBEL5 transcripts and RNA of key tuber identity genes. In StPTB overexpression lines, both the stability and long-distance transport of StBEL5 transcripts were enhanced, whereas in suppression lines stability and transport decreased. Using a transgenic approach, it is shown that the StPTB family of RNA-binding proteins regulate specific stages of development through an interaction with phloem-mobile transcripts of StBEL5.

Indexed as

Gene Expression Regulation, PlantAmino Acid SequencePhylogenyPlant ProteinsPlant TubersPolypyrimidine Tract-Binding ProteinRNA, PlantSequence AlignmentSolanum tuberosumPlant ProteinsPolypyrimidine Tract-Binding ProteinRNA, PlantMobile RNAphloemRNA-binding proteinSolanum tuberosumStPTBtuberization

Identifiers

PMID26283046
PMCPMC4623692
OpenAlexW1899219183

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.