Evidence map›Paper›PMID 26282991›Full record

ArticleBMC genomics2015

Phylogenomic and functional analyses of salmon lice aquaporins uncover the molecular diversity of the superfamily in Arthropoda.

Jon Anders Stavang, Francois Chauvigné, Heidi Kongshaug, Joan Cerdà, Frank Nilsen, Roderick Nigel Finn

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
4.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 49 citations in OpenAlex.

  1. Article
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  6. Recent Advances in Tick Antigen Discovery and Anti-Tick Vaccine Development.International journal of molecular sciences · 2023
    Review
  7. Article
  8. Article
  9. Evolutionary Overview of Aquaporin Superfamily.Advances in experimental medicine and biology · 2023
    Article
  10. The Genome ofGenes · 2022
    Article
  11. Article
  12. Article
  13. Article
  14. Article
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  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Jon Anders StavangSea Lice Research Centre, Department of Biology, Bergen High Technology Centre, University of Bergen, 5020, Bergen, Norway. jon.stavang@uib.no.
Francois ChauvignéSea Lice Research Centre, Department of Biology, Bergen High Technology Centre, University of Bergen, 5020, Bergen, Norway. francois.chauvigne@uib.no.
Heidi KongshaugSea Lice Research Centre, Department of Biology, Bergen High Technology Centre, University of Bergen, 5020, Bergen, Norway. heidi.kongshaug@uib.no.
Joan CerdàInstitut de Recerca i Tecnologia Agroalimentàries (IRTA)-Institut de Ciències del Mar, Consejo Superior de Investigaciones Científicas (CSIC), 08003, Barcelona, Spain. joan.cerda@irta.cat.
Frank NilsenSea Lice Research Centre, Department of Biology, Bergen High Technology Centre, University of Bergen, 5020, Bergen, Norway. frank.nilsen@uib.no.
Roderick Nigel FinnSea Lice Research Centre, Department of Biology, Bergen High Technology Centre, University of Bergen, 5020, Bergen, Norway. nigel.finn@uib.no.
University of Bergen · NOInstitut Català de Ciències del Clima · ESInstitute of Agrifood Research and Technology · ESNorwegian Institute of Marine Research · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAn emerging field in biomedical research is focusing on the roles of aquaporin water channels in parasites that cause debilitating or lethal diseases to their vertebrate hosts. The primary vectorial agents are hematophagous arthropods, including mosquitoes, flies, ticks and lice, however very little is known concerning the functional diversity of aquaporins in non-insect members of the Arthropoda. Here we conducted phylogenomic and functional analyses of aquaporins in the salmon louse, a marine ectoparasitic copepod that feeds on the skin and body fluids of salmonids, and used the primary structures of the isolated channels to uncover the genomic repertoires in Arthropoda.

resultsGenomic screening identified 7 aquaporin paralogs in the louse in contrast to 42 in its host the Atlantic salmon. Phylogenetic inference of the louse nucleotides and proteins in relation to orthologs identified in Chelicerata, Myriapoda, Crustacea and Hexapoda revealed that the arthropod aquaporin superfamily can be classified into three major grades (1) classical aquaporins including Big brain (Bib) and Prip-like (PripL) channels (2) aquaglyceroporins (Glp) and (3) unorthodox aquaporins (Aqp12-like). In Hexapoda, two additional subfamilies exist as Drip and a recently classified entomoglyceroporin (Eglp) group. Cloning and remapping the louse cDNAs to the genomic DNA revealed that they are encoded by 1-7 exons, with two of the Glps being expressed as N-terminal splice variants (Glp1_v1, -1_v2, -3_v1, -3_v2). Heterologous expression of the cRNAs in amphibian oocytes demonstrated that PripL transports water and urea, while Bib does not. Glp1_v1, -2, -3_v1 and -3_v2 each transport water, glycerol and urea, while Glp1_v2 and the Aqp12-like channels were retained intracellularly. Transcript abundance analyses revealed expression of each louse paralog at all developmental stages, except for glp1_v1, which is specific to preadult and adult males.

conclusionsOur data suggest that the aquaporin repertoires of extant arthropods have expanded independently in the different lineages, but can be phylogenetically classified into three major grades as opposed to four present in deuterostome animals. While the aquaporin repertoire of Atlantic salmon represents a 6-fold redundancy compared to the louse, the functional assays reveal that the permeation properties of the different crustacean grades of aquaporin are largely conserved to the vertebrate counterparts.

Indexed as

AnimalsAquaporinsCopepodaFemaleGenetic VariationGenomicsModels, MolecularMultigene FamilyOocytesPhylogenySalmo salarAquaporins

Identifiers

PMID26282991
PMCPMC4539701
OpenAlexW2109449844

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.