Evidence map›Paper›PMID 26280998›Full record

ArticleNature immunology2015

TCF-1 upregulation identifies early innate lymphoid progenitors in the bone marrow.

Qi Yang, Fengyin Li, Christelle Harly, Shaojun Xing, Longyun Ye, Xuefeng Xia, Haikun Wang, Xinxin Wang, Shuyang Yu, Xinyuan Zhou and 3 more

Open access · greenAbstract read
In one paragraph

Article in Nature immunology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 175 papers.

0numbers the graph read from it
0cells of the map it votes in
175citing papers in PubMed
13.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

175 citing papers in PubMed, 274 citations in OpenAlex.

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  16. Review
  17. Regulation of innate lymphoid cell by microbial metabolites.Journal of molecular medicine (Berlin, Germany) · 2025
    Review
  18. Article
  19. Article
  20. Article

115 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Qi YangT-Cell Biology and Development Unit, Laboratory of Genome Integrity, Center for Cancer Research, National Cancer Institute, Bethesda, Maryland, USA.
Fengyin LiDepartment of Microbiology, Carver College of Medicine, University of Iowa, Iowa City, Iowa, USA.
Christelle HarlyT-Cell Biology and Development Unit, Laboratory of Genome Integrity, Center for Cancer Research, National Cancer Institute, Bethesda, Maryland, USA.
Shaojun XingDepartment of Microbiology, Carver College of Medicine, University of Iowa, Iowa City, Iowa, USA.
Longyun YeT-Cell Biology and Development Unit, Laboratory of Genome Integrity, Center for Cancer Research, National Cancer Institute, Bethesda, Maryland, USA.
Xuefeng XiaDepartment of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Haikun WangDepartment of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Xinxin WangDepartment of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Shuyang YuDepartment of Microbiology, Carver College of Medicine, University of Iowa, Iowa City, Iowa, USA.
Xinyuan ZhouDepartment of Microbiology, Carver College of Medicine, University of Iowa, Iowa City, Iowa, USA.
Maggie CamCCR Collaborative Bioinformatics Resource, National Cancer Institute, Bethesda, Maryland, USA.
Hai-Hui XueDepartment of Microbiology, Carver College of Medicine, University of Iowa, Iowa City, Iowa, USA.
Avinash BhandoolaT-Cell Biology and Development Unit, Laboratory of Genome Integrity, Center for Cancer Research, National Cancer Institute, Bethesda, Maryland, USA.
University of Iowa · USUniversity of Pennsylvania · USNational Cancer Institute · USCenter for Cancer Research · US

Funding

T cell Development and RegenerationZIABC011633 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI BHANDOOLA, AVINASH · 2015 to 2025
$20.5M
Tcf/Lef-b-catenin in T cell identity and cancerR01AI112579 · NIAID · UNIVERSITY OF IOWA · PI Hai-Hui Xue · 2015 to 2026
$5.4M
Early T lineage progenitorsR01AI059621 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI BHANDOOLA, AVINASH · 2004 to 2013
$3.5M
Natural helper cells in allergic airway inflammationR21AI098428 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI BHANDOOLA, AVINASH · 2012 to 2013
$426k
Epigenomic landscape in naive, effector, and memory CD8 T cellsR21AI115149 · NIAID · UNIVERSITY OF IOWA · PI TAN, KAI, XUE, HAI-HUI · 2015 to 2016
$417k
Molecular mechanisms controlling differentiation of memory CD8 T cellsR21AI119160 · NIAID · UNIVERSITY OF IOWA · PI BADOVINAC, VLADIMIR P, XUE, HAI-HUI · 2015 to 2016
$414k
Early T Lineage ProgenitorsR56AI059621 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI GREENE, MARK I · 2014 to 2014
$400k
Decoding TCF1-controlled transcriptional program that promotes memory T cell fateR21AI105351 · NIAID · UNIVERSITY OF IOWA · PI XUE, HAI-HUI · 2013 to 2014
$378k
Intramural NIH HHS Z99 CA999999NHLBI NIH HHS HL11074103NIAID NIH HHS AI059621NIAID NIH HHS AI098428NIAID NIH HHS AI105351NIAID NIH HHS AI112579NIAID NIH HHS AI115149NIAID NIH HHS AI119160NIAID NIH HHS R01 AI059621NIAID NIH HHS R01 AI112579NIAID NIH HHS R21 AI098428NIAID NIH HHS R21 AI105351NIAID NIH HHS R21 AI115149NIAID NIH HHS R21 AI119160NIAID NIH HHS R56 AI059621
6 · The paper itself

Abstract

The cellular and molecular events that drive the early development of innate lymphoid cells (ILCs) remain poorly understood. We show that the transcription factor TCF-1 is required for the efficient generation of all known adult ILC subsets and their precursors. Using novel reporter mice, we identified a new subset of early ILC progenitors (EILPs) expressing high amounts of TCF-1. EILPs lacked efficient T and B lymphocyte potential but efficiently gave rise to NK cells and all known adult helper ILC lineages, indicating that they are the earliest ILC-committed progenitors identified so far. Our results suggest that upregulation of TCF-1 expression denotes the earliest stage of ILC fate specification. The discovery of EILPs provides a basis for deciphering additional signals that specify ILC fate.

Indexed as

Immunity, InnateUp-RegulationAnimalsBone Marrow CellsCells, CulturedFlow CytometryLymphocytesMiceMicroarray AnalysisT Cell Transcription Factor 1T Cell Transcription Factor 1

Identifiers

PMID26280998
PMCPMC4575643
OpenAlexW1164981660

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.