Evidence map›Paper›PMID 26279647›Full record

ArticleClinical proteomics2015

Blood-based lung cancer biomarkers identified through proteomic discovery in cancer tissues, cell lines and conditioned medium.

Charles E Birse, Robert J Lagier, William FitzHugh, Harvey I Pass, William N Rom, Eric S Edell, Aaron O Bungum, Fabien Maldonado, James R Jett, Mehdi Mesri and 12 more

Abstract read
In one paragraph

Article in Clinical proteomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
  2. Omics-based molecular classifications empowering in precision oncology.Cellular oncology (Dordrecht, Netherlands) · 2024
    Review
  3. Article
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  12. Article
  13. Review
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  15. Article
  16. Quantitative proteomics in lung cancer.Journal of biomedical science · 2017
    Review
  17. Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Charles E BirseCelera employees during the course of these studies, Celera, 1311 Harbor Bay Parkway, Alameda, CA 94502 USA.
Robert J LagierCelera employees during the course of these studies, Celera, 1311 Harbor Bay Parkway, Alameda, CA 94502 USA.
William FitzHughCelera employees during the course of these studies, Celera, 1311 Harbor Bay Parkway, Alameda, CA 94502 USA.
Harvey I PassDepartment of Cardiothoracic Surgery, NYU Langone Medical Center, 530 First Avenue, New York, NY USA.
William N RomDivision of Pulmonary, Critical Care, and Sleep Medicine, NYU School of Medicine, New York, NY USA.
Eric S EdellDivision of Pulmonary and Critical Care Medicine, Mayo Clinic, Rochester, MN USA.
Aaron O BungumDivision of Pulmonary and Critical Care Medicine, Mayo Clinic, Rochester, MN USA.
Fabien MaldonadoDivision of Pulmonary and Critical Care Medicine, Mayo Clinic, Rochester, MN USA.
James R JettDivision of Oncology, National Jewish Health, Denver, CO USA.
Mehdi MesriCelera employees during the course of these studies, Celera, 1311 Harbor Bay Parkway, Alameda, CA 94502 USA.
Erin SultCelera employees during the course of these studies, Celera, 1311 Harbor Bay Parkway, Alameda, CA 94502 USA.
Elizabeth JoseloffCelera employees during the course of these studies, Celera, 1311 Harbor Bay Parkway, Alameda, CA 94502 USA.
Aiqun LiCelera employees during the course of these studies, Celera, 1311 Harbor Bay Parkway, Alameda, CA 94502 USA.
Jenny HeidbrinkCelera employees during the course of these studies, Celera, 1311 Harbor Bay Parkway, Alameda, CA 94502 USA.
Gulshan DhariwalCelera employees during the course of these studies, Celera, 1311 Harbor Bay Parkway, Alameda, CA 94502 USA.
Chad DanisCelera employees during the course of these studies, Celera, 1311 Harbor Bay Parkway, Alameda, CA 94502 USA.
Jennifer L TomicCelera employees during the course of these studies, Celera, 1311 Harbor Bay Parkway, Alameda, CA 94502 USA.
Robert J BruceCelera employees during the course of these studies, Celera, 1311 Harbor Bay Parkway, Alameda, CA 94502 USA.
Paul A MooreCelera employees during the course of these studies, Celera, 1311 Harbor Bay Parkway, Alameda, CA 94502 USA.
Tao HeCelera employees during the course of these studies, Celera, 1311 Harbor Bay Parkway, Alameda, CA 94502 USA.
Marcia E LewisCelera employees during the course of these studies, Celera, 1311 Harbor Bay Parkway, Alameda, CA 94502 USA.
Steve M RubenCelera employees during the course of these studies, Celera, 1311 Harbor Bay Parkway, Alameda, CA 94502 USA.

Funding

NYU Lung Cancer Biomarker CenterU01CA086137 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ROM, WILLIAM N · 2000 to 2015
$15.3M
The North American Mesothelioma ConsortiumU01CA111295 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI HUFLEJT, MARGARET ELISABETH, PASS, HARVEY IRA · 2005 to 2016
$4.8M
NCI NIH HHS U01 CA086137NCI NIH HHS U01 CA111295
6 · The paper itself

Abstract

backgroundSupport for early detection of lung cancer has emerged from the National Lung Screening Trial (NLST), in which low-dose computed tomography (LDCT) screening reduced lung cancer mortality by 20 % relative to chest x-ray. The US Preventive Services Task Force (USPSTF) recently recommended annual screening for the high-risk population, concluding that the benefits (life years gained) outweighed harms (false positive findings, abortive biopsy/surgery, radiation exposure). In making their recommendation, the USPSTF noted that the moderate net benefit of screening was dependent on the resolution of most false-positive results without invasive procedures. Circulating biomarkers may serve as a valuable adjunctive tool to imaging.

resultsWe developed a broad-based proteomics discovery program, integrating liquid chromatography/mass spectrometry (LC/MS) analyses of freshly resected lung tumor specimens (n = 13), lung cancer cell lines (n = 17), and conditioned media collected from tumor cell lines (n = 7). To enrich for biomarkers likely to be found at elevated levels in the peripheral circulation of lung cancer patients, proteins were prioritized based on predicted subcellular localization (secreted, cell-membrane associated) and differential expression in disease samples. 179 candidate biomarkers were identified. Several markers selected for further validation showed elevated levels in serum collected from subjects with stage I NSCLC (n = 94), relative to healthy smoker controls (n = 189). An 8-marker model was developed (TFPI, MDK, OPN, MMP2, TIMP1, CEA, CYFRA 21-1, SCC) which accurately distinguished subjects with lung cancer (n = 50) from high risk smokers (n = 50) in an independent validation study (AUC = 0.775).

conclusionsIntegrating biomarker discovery from multiple sample types (fresh tissue, cell lines and conditioned medium) has resulted in a diverse repertoire of candidate biomarkers. This unique collection of biomarkers may have clinical utility in lung cancer detection and diagnoses.

Indexed as

BiomarkerDiscoveryEarly detectionLung cancerMass spectrometryProteomics

Identifiers

PMID26279647
PMCPMC4537594

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.