Evidence map›Paper›PMID 26279576›Full record

ArticleCell reports2015

Deregulation of the Ras-Erk Signaling Axis Modulates the Enhancer Landscape.

Behnam Nabet, Pilib Ó Broin, Jaime M Reyes, Kevin Shieh, Charles Y Lin, Christine M Will, Relja Popovic, Teresa Ezponda, James E Bradner, Aaron A Golden and 1 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 45 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Behnam NabetDivision of Hematology/Oncology, Northwestern University Feinberg School of Medicine, Chicago, IL 60611, USA; Driskill Graduate Program in Life Sciences, Northwestern University Feinberg School of Medicine, Chicago, IL 60611, USA.
Pilib Ó BroinDepartment of Genetics, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
Jaime M ReyesDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02115, USA.
Kevin ShiehDepartment of Genetics, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
Charles Y LinDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02115, USA.
Christine M WillDivision of Hematology/Oncology, Northwestern University Feinberg School of Medicine, Chicago, IL 60611, USA.
Relja PopovicDivision of Hematology/Oncology, Northwestern University Feinberg School of Medicine, Chicago, IL 60611, USA.
Teresa EzpondaDivision of Hematology/Oncology, Northwestern University Feinberg School of Medicine, Chicago, IL 60611, USA.
James E BradnerDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02115, USA.
Aaron A GoldenDepartment of Genetics, Albert Einstein College of Medicine, Bronx, NY 10461, USA; Department of Mathematical Sciences, Yeshiva University, New York, NY 10033, USA.
Jonathan D LichtDivision of Hematology/Oncology, Northwestern University Feinberg School of Medicine, Chicago, IL 60611, USA. Electronic address: j-licht@northwestern.edu.
Northwestern University · USDana-Farber Cancer Institute · USAlbert Einstein College of Medicine · USYeshiva University · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007288 · NIGMS · YESHIVA UNIVERSITY · PI AKABAS, MYLES H. · 1985 to 2022
$35.6M
CELLULAR &MOLECULAR BASIS OF DISEASE TRAINING PROGRAMT32GM008061 · NIGMS · NORTHWESTERN UNIVERSITY · PI CARTHEW, RICHARD W. · 1985 to 2022
$17.1M
TRANS-NETWORK PROJECTSU54CA143869 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI MARKO, JOHN F · 2009 to 2013
$12.8M
TRANSCRIPTIONAL REPRESSION BY THE WTI PROTEINR01CA059998 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI LICHT, JONATHAN D. · 1994 to 2010
$3.3M
NCI NIH HHS CA120184NCI NIH HHS CA59998NCI NIH HHS R01 CA059998NCI NIH HHS U54 CA143869NCI NIH HHS U54CA143869NIGMS NIH HHS GM007288NIGMS NIH HHS GM08061NIGMS NIH HHS T32 GM007288NIGMS NIH HHS T32 GM008061
6 · The paper itself

Abstract

Unrestrained receptor tyrosine kinase (RTK) signaling and epigenetic deregulation are root causes of tumorigenesis. We establish linkage between these processes by demonstrating that aberrant RTK signaling unleashed by oncogenic HRas(G12V) or loss of negative feedback through Sprouty gene deletion remodels histone modifications associated with active typical and super-enhancers. However, although both lesions disrupt the Ras-Erk axis, the expression programs, enhancer signatures, and transcription factor networks modulated upon HRas(G12V) transformation or Sprouty deletion are largely distinct. Oncogenic HRas(G12V) elevates histone 3 lysine 27 acetylation (H3K27ac) levels at enhancers near the transcription factor Gata4 and the kinase Prkcb, as well as their expression levels. We show that Gata4 is necessary for the aberrant gene expression and H3K27ac marking at enhancers, and Prkcb is required for the oncogenic effects of HRas(G12V)-driven cells. Taken together, our findings demonstrate that dynamic reprogramming of the cellular enhancer landscape is a major effect of oncogenic RTK signaling.

Indexed as

Enhancer Elements, GeneticGene Expression Regulation, NeoplasticMAP Kinase Signaling SystemAcetylationAdaptor Proteins, Signal TransducingAnimalsCarcinogenesisCell LineExtracellular Signal-Regulated MAP KinasesGATA4 Transcription FactorHistonesMembrane ProteinsMicePhosphoproteinsProtein Kinase C betaProtein Processing, Post-TranslationalAdaptor Proteins, Signal TransducingExtracellular Signal-Regulated MAP KinasesGata4 protein, mouseGATA4 Transcription FactorHistonesHras protein, mouseMembrane ProteinsPhosphoproteinsProtein Kinase C betaProto-Oncogene Proteins p21(ras)Receptor Protein-Tyrosine KinasesSpry1 protein, mouse

Identifiers

PMID26279576
PMCPMC4551578
OpenAlexW1920455166

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.