ArticleScientific reports2015
Transcriptomic Analysis of the Regulation of Rhizome Formation in Temperate and Tropical Lotus (Nelumbo nucifera).
Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.
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Who cites it
66 citing papers in PubMed.
- Overexpression of LotusPlants (Basel, Switzerland) · 2026Article
- Two telomere-to-telomere Nelumbo genome assemblies reveal domestication history and empower precision breeding.Nature communications · 2026Article
- The genetic and developmental enigma of rhizomes: crucial traits with limited understanding.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Review
- Proteomic Analysis of Lotus-DerivedPlants (Basel, Switzerland) · 2026Article
- The transcriptional landscape and dynamics regulating organ differentiation and dormancy in Curcuma alismatifolia.Plant physiology · 2025Article
- Pharmacological Potential and Mechanisms of Bisbenzylisoquinoline Alkaloids from Lotus Seed Embryos.Biomolecules · 2025Review
- Metabolic and transcriptional analysis of tuber expansion in Curcuma kwangsiensis.Scientific reports · 2025Article
- Sonication-assisted Rhizobium radiobacter-mediated genetic transformation of Indian Lotus (Nelumbo nucifera Gaertn.).Transgenic research · 2025Article
- Transcriptomics integrated with targeted metabolomics reveals endogenous hormone changes in tuberous root expansion of Pueraria.BMC genomics · 2024Article
- Integrating Full-Length and Second-Generation Transcriptomics to Reveal Differentially Expressed Genes Associated with the Development ofLife (Basel, Switzerland) · 2023Article
- Petal size is controlled by the MYB73/TPL/HDA19-miR159-CKX6 module regulating cytokinin catabolism in Rosa hybrida.Nature communications · 2023Article
- Histology, physiology, and transcriptomic and metabolomic profiling reveal the developmental dynamics of annual shoots in tree peonies (Horticulture research · 2023Article
- Screening of Early Flowering Lotus (Plants (Basel, Switzerland) · 2023Article
- Can the Wild Perennial, Rhizomatous Rice Species Oryza longistaminata be a Candidate for De Novo Domestication?Rice (New York, N.Y.) · 2023Review
- Two plants improve stress response of a subterranean herbivore by downregulating amphetamine addiction pathways.Frontiers in veterinary science · 2023Article
- Transcriptomic and Metabolomic Analyses Reveal That Fullerol Improves Drought Tolerance inInternational journal of molecular sciences · 2022Article
- Identification of LsPIN1 gene and its potential functions in rhizome turning of Leymus secalinus.BMC genomics · 2022Article
- Article
- Identification of QTLs and a putative candidate gene involved in rhizome enlargement of Asian lotus (Nelumbo nucifera).Plant molecular biology · 2022Article
- Genome-Wide Identification and Expression Analysis of Dof Transcription Factors in Lotus (Plants (Basel, Switzerland) · 2022Article
6 more citing papers are in PubMed but not listed here.
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7 authors.
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Abstract
Rhizome is the storage organ of lotus derived from modified stems. The development of rhizome is a complex process and depends on the balanced expression of the genes that is controlled by environmental and endogenous factors. However, little is known about the mechanism that regulates rhizome girth enlargement. In this study, using RNA-seq, transcriptomic analyses were performed at three rhizome developmental stages-the stolon, middle swelling and later swelling stage -in the cultivars 'ZO' (temperate lotus with enlarged rhizome) and 'RL' (tropical lotus with stolon). About 348 million high-quality reads were generated, and 88.5% of the data were mapped to the reference genome. Of 26783 genes identified, 24069 genes were previously predicted in the reference, and 2714 genes were novel transcripts. Moreover, 8821 genes were differentially expressed between the cultivars at the three stages. Functional analysis identified that these genes were significantly enriched in pathways carbohydrate metabolism and plant hormone signal transduction. Twenty-two genes involved in photoperiod pathway, starch metabolism and hormone signal transduction were candidate genes inducing rhizome girth enlargement. Comparative transcriptomic analysis detected several differentially expressed genes and potential candidate genes required for rhizome girth enlargement, which lay a foundation for future studies on molecular mechanisms underlying rhizome formation.
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