ArticleScientific reports2015
Genome-wide DNA polymorphisms in low Phosphate tolerant and sensitive rice genotypes.
Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
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Who cites it
13 citing papers in PubMed, 29 citations in OpenAlex.
- Adapting to low phosphorus: Alterations in HvSPX4 expression levels in barley.Plant physiology · 2025Article
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- Purple acid phosphatases: roles in phosphate utilization and new emerging functions.Plant cell reports · 2022Review
- Deep sampling and pooled amplicon sequencing reveals hidden genic variation in heterogeneous rye accessions.BMC genomics · 2020Article
- The ferroxidase LPR5 functions in the maintenance of phosphate homeostasis and is required for normal growth and development of rice.Journal of experimental botany · 2020Article
- Comparative Genomic Analysis of Rice with Contrasting Photosynthesis and Grain Production under Salt Stress.Genes · 2019Article
- Genomics-Assisted Identification and Characterization of the Genetic Variants Underlying Differential Nitrogen Use Efficiencies in Allotetraploid Rapeseed Genotypes.G3 (Bethesda, Md.) · 2018Article
- Article
- Exploiting the Genomic Diversity of Rice (Frontiers in plant science · 2018Article
- Genome-Wide Analysis of Genetic Variations and the Detection of Rich Variants of NBS-LRR Encoding Genes in Common Wild Rice Lines.Plant molecular biology reporter · 2018Article
- OsHAD1, a Haloacid Dehalogenase-Like APase, Enhances Phosphate Accumulation.Plant physiology · 2017Article
- Identification of SNP and SSR Markers in Finger Millet Using Next Generation Sequencing Technologies.PloS one · 2016Article
- Comparative Morphophysiological Analyses and Molecular Profiling Reveal Pi-Efficient Strategies of a Traditional Rice Genotype.Frontiers in plant science · 2015Article
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Authors and funding
3 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Soil Phosphorus (P) deficiency is one of the major challenges to rice crop world-wide. Modern rice genotypes are highly P-responsive and rely on high input of P fertilizers. However, low P tolerant traditional cultivars and landraces have genetic potential to sustain well under low P. Identification of high resolution DNA polymorphisms (SNPs and InDels) in such contrasting genotypes is largely missing for low P response at gene levels. Here, we report high quality DNA polymorphisms in low P sensitive genotype, PB1 and tolerant traditional genotype, Dular. We performed whole genome resequencing using Illumina NGS platform and identified a total of 5,157,939 sequence variants in PB1 and Dular with reference to Nipponbare genome. We have identified approximately 2.3 million and 2.9 million high quality polymorphisms in PB1 and Dular, respectively, with an average read depth of ≥24X. We further mapped several DNA polymorphisms (non-synonymous and regulatory variants) having potential functional significance to key Phosphate Starvation Responsive (PSR) and root architecture genes in Dular and Kasalath using a compiled list of low P responsive genes. These identified variants can serve as a useful source of genetic variability for improving low P tolerance and root architecture of high yielding modern genotypes.
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