Evidence map›Paper›PMID 26278404›Full record

ArticleMolecular microbiology2015

GacA is essential for Group A Streptococcus and defines a new class of monomeric dTDP-4-dehydrorhamnose reductases (RmlD).

Samantha L van der Beek, Yoann Le Breton, Andrew T Ferenbach, Robert N Chapman, Daan M F van Aalten, Iva Navratilova, Geert-Jan Boons, Kevin S McIver, Nina M van Sorge, Helge C Dorfmueller

Open access · hybridAbstract read
In one paragraph

Article in Molecular microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 57 citations in OpenAlex.

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  9. Disruption of protein rhamnosylation affects theCell surface (Amsterdam, Netherlands) · 2021
    Article
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  19. Group A, B, C, and GThe Journal of biological chemistry · 2019
    Article
  20. Discovery of an RmlC/D fusion protein in the microalgaThe Journal of biological chemistry · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 4 countries.

Samantha L van der BeekUniversity Medical Center Utrecht, Medical Microbiology, Heidelberglaan 100, 3584 CX, Utrecht, The Netherlands.
Yoann Le BretonDepartment of Cell Biology and Molecular Genetics, Maryland Pathogen Research Institute, University of Maryland, 3124 Biosciences Research Building, College Park, MD 20742, USA.
Andrew T FerenbachDivision of Molecular Microbiology, University of Dundee, School of Life Sciences, Dow Street, DD1 5EH, Dundee, UK.
Robert N ChapmanComplex Carbohydrate Research Center, Department of Chemistry, The University of Georgia, 315 Riverbend Road, Athens, USA.
Daan M F van AaltenDivision of Molecular Microbiology, University of Dundee, School of Life Sciences, Dow Street, DD1 5EH, Dundee, UK.
Iva NavratilovaDivision of Biological Chemistry and Drug Discovery, University of Dundee, School of Life Sciences, Dow Street, DD1 5EH, Dundee, UK.
Geert-Jan BoonsComplex Carbohydrate Research Center, Department of Chemistry, The University of Georgia, 315 Riverbend Road, Athens, USA.
Kevin S McIverDepartment of Cell Biology and Molecular Genetics, Maryland Pathogen Research Institute, University of Maryland, 3124 Biosciences Research Building, College Park, MD 20742, USA.
Nina M van SorgeUniversity Medical Center Utrecht, Medical Microbiology, Heidelberglaan 100, 3584 CX, Utrecht, The Netherlands.
Helge C DorfmuellerDivision of Molecular Microbiology, University of Dundee, School of Life Sciences, Dow Street, DD1 5EH, Dundee, UK.
University of Dundee · GBUniversity of Georgia · USUniversity of Maryland, College Park · USUniversity Hospital Heidelberg · DEUtrecht University · NL

Funding

PRD-Containing Virulence Regulators of Pathogenic StreptococciR01AI047928 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI MCIVER, KEVIN S. · 2001 to 2023
$6.5M
Medical Research Council G0900138Medical Research Council M004139Medical Research Council MR/M004139/1NIAID NIH HHS AI047928NIAID NIH HHS R01 AI047928Wellcome TrustWellcome Trust WT087590MA
6 · The paper itself

Abstract

The sugar nucleotide dTDP-L-rhamnose is critical for the biosynthesis of the Group A Carbohydrate, the molecular signature and virulence determinant of the human pathogen Group A Streptococcus (GAS). The final step of the four-step dTDP-L-rhamnose biosynthesis pathway is catalyzed by dTDP-4-dehydrorhamnose reductases (RmlD). RmlD from the Gram-negative bacterium Salmonella is the only structurally characterized family member and requires metal-dependent homo-dimerization for enzymatic activity. Using a biochemical and structural biology approach, we demonstrate that the only RmlD homologue from GAS, previously renamed GacA, functions in a novel monomeric manner. Sequence analysis of 213 Gram-negative and Gram-positive RmlD homologues predicts that enzymes from all Gram-positive species lack a dimerization motif and function as monomers. The enzymatic function of GacA was confirmed through heterologous expression of gacA in a S. mutans rmlD knockout, which restored attenuated growth and aberrant cell division. Finally, analysis of a saturated mutant GAS library using Tn-sequencing and generation of a conditional-expression mutant identified gacA as an essential gene for GAS. In conclusion, GacA is an essential monomeric enzyme in GAS and representative of monomeric RmlD enzymes in Gram-positive bacteria and a subset of Gram-negative bacteria. These results will help future screens for novel inhibitors of dTDP-L-rhamnose biosynthesis.

Indexed as

Amino Acid SequenceBacterial ProteinsCarbohydrate DehydrogenasesCarbohydrate EpimerasesCloning, MolecularGram-Positive BacteriaHigh-Throughput Nucleotide SequencingHumansModels, MolecularMutationNucleoside Diphosphate SugarsProtein Structure, TertiaryRhamnoseSequence AlignmentStreptococcus pyogenesThymine NucleotidesBacterial ProteinsCarbohydrate DehydrogenasesCarbohydrate EpimerasesdTDP-4-dehydrorhamnose reductasedTDP-4-ketorhamnoseGacA protein, BacteriaNucleoside Diphosphate SugarsRhamnosethymidine diphosphate rhamnoseThymine Nucleotides

Identifiers

PMID26278404
PMCPMC4832382
OpenAlexW1940322947

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.