Evidence map›Paper›PMID 26278207›Full record

ArticleBirth defects research. Part A, Clinical and molecular teratology2015

Novel evidence of association with nonsyndromic cleft lip with or without cleft palate was shown for single nucleotide polymorphisms in FOXF2 gene in an Asian population.

Lingxue Bu, Qianqian Chen, Hong Wang, Tianxiao Zhang, Jacqueline B Hetmanski, Holger Schwender, Margaret Parker, Yah-Huei Wu Chou, Vincent Yeow, Samuel S Chong and 4 more

Open access · greenAbstract read
In one paragraph

Article in Birth defects research. Part A, Clinical and molecular teratology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.0field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
  2. DNA-based eyelid trait prediction in Chinese Han population.International journal of legal medicine · 2021
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  9. Sonic hedgehog regulation ofDevelopment (Cambridge, England) · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 11 institutions in 6 countries.

Lingxue BuDepartment of Oral and Maxillofacial Surgery, Affiliated Hospital of Qingdao University, Qingdao, China.
Qianqian ChenDepartment of Epidemiology and Biostatistics, School of Public Health, Peking University, Beijing, China.
Hong WangDepartment of Epidemiology and Biostatistics, School of Public Health, Peking University, Beijing, China.
Tianxiao ZhangDivision of Biology and Biomedical Sciences, Washington University, St. Louis, Missouri.
Jacqueline B HetmanskiDepartment of Epidemiology, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland.
Holger SchwenderMathematical Institute, Heinrich Heine University Duesseldorf, Duesseldorf, Germany.
Margaret ParkerDepartment of Epidemiology, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland.
Yah-Huei Wu ChouDepartment of Medical Research, Chang Gung Memorial Hospital, Taipei, Taiwan.
Vincent YeowDepartment of Plastic Surgery, K K Women's and Children's Hospital, Singapore.
Samuel S ChongDepartment of Pediatrics, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Khoo Teck Puat - National University Children's Medical Institute, National University Health System, Singapore.
Bo ZhangDepartment of Biomedical Engineering, Xi'an JiaoTong University, Xi'an, China.
Ethylin Wang JabsDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York City, New York, USA. Department of Pediatrics, Johns Hopkins University School of Medicine, Baltimore, Maryland.
Alan F ScottDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland.
Terri H BeatyDepartment of Epidemiology, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland.
Johns Hopkins University · USPeking University · CNChang Gung Memorial Hospital · TWHeinrich Heine University Düsseldorf · DEIcahn School of Medicine at Mount Sinai · USJohns Hopkins Medicine · USKK Women's and Children's Hospital · SGNational University Health System · SGQingdao University · CNWashington University in St. Louis · USXi'an Jiaotong University · CN

Funding

International Genetic Epidemiology of Oral CleftsR01DE014581 · NIDCR · JOHNS HOPKINS UNIVERSITY · PI BEATY, TERRI H · 2004 to 2013
$6.6M
Collaborative Genetics Research Training ProgramD43TW006176 · FIC · JOHNS HOPKINS UNIVERSITY · PI JABS, ETHYLIN WANG · 2002 to 2006
$2.0M
International Consortium to Identify Genes and Interactions Controlling Oral ClefU01DE018993 · NIDCR · JOHNS HOPKINS UNIVERSITY · PI BEATY, TERRI H · 2007 to 2008
$1.6M
INTERNATIONAL GENETIC EPIDEMIOLOGY OF ORAL CLEFTSR21DE013707 · NIDCR · JOHNS HOPKINS UNIVERSITY · PI BEATY, TERRI H · 2000 to 2001
$246k
FIC NIH HHS D43 TW006176FIC NIH HHS D43-TW006176NIDCR NIH HHS R01 DE014581NIDCR NIH HHS R01-DE-014581NIDCR NIH HHS R21-DE-013707NIDCR NIH HHS U01 DE018993
6 · The paper itself

Abstract

backgroundThe forkhead box F2 gene (FOXF2) located in chromosome 6p25.3 has been shown to play a crucial role in palatal development in mouse and rat models. To date, no evidence of linkage or association has been reported for this gene in humans with oral clefts.

methodsAllelic transmission disequilibrium tests were used to robustly assess evidence of linkage and association with nonsyndromic cleft lip with or without cleft palate for nine single nucleotide polymorphisms (SNPs) in and around FOXF2 in both Asian and European trios using PLINK.

resultsStatistically significant evidence of linkage and association was shown for two SNPs (rs1711968 and rs732835) in 216 Asian trios where the empiric P values with permutation tests were 0.0016 and 0.005, respectively. The corresponding estimated odds ratios for carrying the minor allele at these SNPs were 2.05 (95% confidence interval = 1.41, 2.98) and 1.77 (95% confidence interval = 1.26, 2.49), respectively.

conclusionOur results provided statistical evidence of linkage and association between FOXF2 and nonsyndromic cleft lip with or without cleft palate.

Indexed as

Polymorphism, Single NucleotideAdultAnimalsAsian PeopleChromosomes, Human, Pair 6Cleft LipCleft PalateFemaleForkhead Transcription FactorsHumansMaleMiceRatsForkhead Transcription FactorsFOXF2 protein, humanFBATFOXF2nonsyndromic cleft lip with or without cleft palatePLINKSNPtransmission disequilibrium test

Identifiers

PMID26278207
PMCPMC5180447
OpenAlexW1545145970

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.