Evidence map›Paper›PMID 26278006›Full record

ArticleInternational journal of obesity (2005)2016

A novel interaction between the FLJ33534 locus and smoking in obesity: a genome-wide study of 14 131 Pakistani adults.

S Ahmad, W Zhao, F Renström, A Rasheed, M Zaidi, M Samuel, N Shah, N H Mallick, D Shungin, K S Zaman and 11 more

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In one paragraph

Article in International journal of obesity (2005), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it, 18 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. The importance of gene-environment interactions in human obesity.Clinical science (London, England : 1979) · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 12 institutions in 6 countries.

S AhmadDepartment of Clinical Sciences, Genetic and Molecular Epidemiology Unit, Lund University Diabetes Centre, Skåne University Hospital, Lund University, Malmö, Sweden.
W ZhaoPerelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0002-8301-9297
F RenströmDepartment of Clinical Sciences, Genetic and Molecular Epidemiology Unit, Lund University Diabetes Centre, Skåne University Hospital, Lund University, Malmö, Sweden.
A RasheedCenter for Non-Communicable Diseases Pakistan, Karachi, Pakistan.
M ZaidiCenter for Non-Communicable Diseases Pakistan, Karachi, Pakistan.
M SamuelCenter for Non-Communicable Diseases Pakistan, Karachi, Pakistan.
N ShahCenter for Non-Communicable Diseases Pakistan, Karachi, Pakistan.
N H MallickPunjab Institute of Cardiology, Lahore, Pakistan.
D ShunginDepartment of Clinical Sciences, Genetic and Molecular Epidemiology Unit, Lund University Diabetes Centre, Skåne University Hospital, Lund University, Malmö, Sweden.
K S ZamanNational Institute of Cardiovascular Diseases, Karachi, Pakistan.
M IshaqKarachi Institute of Heart Diseases, Karachi, Pakistan.
S Z RasheedKarachi Institute of Heart Diseases, Karachi, Pakistan.
F-Ur-R MemonRed Crescent Institute of Cardiology, Hyderabad, Karachi, Pakistan.
B HanifTabba Heart Institute, Karachi, Pakistan.
M S LakhaniTabba Heart Institute, Karachi, Pakistan.
F AhmedDepartment of Cardiology, Liaquat National Hospital, Karachi, Pakistan.
S U KazmiDepartment of Microbiology, University of Karachi, Karachi, Pakistan.
P DeloukasWilliam Harvey Research Institute, Barts and The London School of Medicine and Dentistry, Queen Mary University of London, London, UK.
P FrossardCenter for Non-Communicable Diseases Pakistan, Karachi, Pakistan.
P W FranksDepartment of Clinical Sciences, Genetic and Molecular Epidemiology Unit, Lund University Diabetes Centre, Skåne University Hospital, Lund University, Malmö, Sweden.
D SaleheenPerelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, USA.
Center for Non-Communicable Diseases · PKLund University · SEKarachi Institute of Heart Diseases · PKTabba Heart Institute · PKCOMSATS University Islamabad · PKHarvard University · USLiaquat National Hospital · PKNational Institute of Cardiovascular Diseases · PKPunjab Institute of Cardiology · PKQueen Mary University of London · GBUniversity of Karachi · PKUniversity of Pennsylvania · US

Funding

British Heart FoundationWellcome Trust
6 · The paper itself

Abstract

backgroundObesity is a complex disease caused by the interplay of genetic and lifestyle factors, but identification of gene-lifestyle interactions in obesity has remained challenging. Few large-scale studies have reported use of genome-wide approaches to investigate gene-lifestyle interactions in obesity.

methodsIn the Pakistan Risk of Myocardial Infraction Study, a cross-sectional study based in Pakistan, we calculated body mass index (BMI) variance estimates (square of the residual of inverse-normal transformed BMI z-score) in 14 131 participants and conducted genome-wide heterogeneity of variance analyses (GWHVA) for this outcome. All analyses were adjusted for age, age(2), sex and genetic ancestry.

resultsThe GWHVA analyses identified an intronic variant, rs140133294, in the FLJ33544 gene in association with BMI variance (P-value=3.1 × 10(-8)). In explicit tests of gene × lifestyle interaction, smoking was found to significantly modify the effect of rs140133294 on BMI (Pinteraction=0.0005), whereby the minor allele (T) was associated with lower BMI in current smokers, while positively associated with BMI in never smokers. Analyses of ENCODE data at the FLJ33534 locus revealed features indicative of open chromatin and high confidence DNA-binding motifs for several transcription factors, providing suggestive biological support for a mechanism of interaction.

conclusionsIn summary, we have identified a novel interaction between smoking and variation at the FLJ33534 locus in relation to BMI in people from Pakistan.

Indexed as

Genome-Wide Association StudyAdultAsian PeopleBody Mass IndexCross-Sectional StudiesFemaleGenetic Predisposition to DiseaseHumansLife StyleMaleObesityPakistanPolymorphism, Single NucleotideReceptors, NicotinicSmokingReceptors, Nicotinic

Identifiers

PMID26278006
OpenAlexW1464757730

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.