Evidence map›Paper›PMID 26277721›Full record

ReviewFunctional & integrative genomics2015

Caspases in plants: metacaspase gene family in plant stress responses.

David Fagundes, Bianca Bohn, Caroline Cabreira, Fábio Leipelt, Nathalia Dias, Maria H Bodanese-Zanettini, Alexandro Cagliari

Abstract readReview
PubMed Publisher
In one paragraph

Review in Functional & integrative genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 80 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Genome assembly of the snow lotus speciesHorticulture research · 2023
    Article
  7. Article
  8. Article
  9. A Phosphoproteomics Study of the SoybeanFrontiers in plant science · 2022
    Article
  10. The MetacaspaseFrontiers in plant science · 2022
    Article
  11. Article
  12. Peptidome: Chaos or Inevitability.International journal of molecular sciences · 2021
    Review
  13. Programmed Cell Death in DevelopingInternational journal of molecular sciences · 2021
    Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

David FagundesUniversidade Estadual do Rio Grande do Sul (UERGS), CEP 96816-50, Santa Cruz do Sul, RS, Brazil. dsanttos007@hotmail.com.
Bianca BohnUniversidade Estadual do Rio Grande do Sul (UERGS), CEP 96816-50, Santa Cruz do Sul, RS, Brazil. biabohn@hotmail.com.
Caroline CabreiraUniversidade Federal do Rio Grande do Sul (UFRGS), Porto Alegre, RS, Brazil. carol.cabreira@yahoo.com.br.
Fábio LeipeltUniversidade Estadual do Rio Grande do Sul (UERGS), CEP 96816-50, Santa Cruz do Sul, RS, Brazil. fabioleipelt@hotmail.com.
Nathalia DiasUniversidade Estadual do Rio Grande do Sul (UERGS), CEP 96816-50, Santa Cruz do Sul, RS, Brazil. nat112006@yahoo.com.br.
Maria H Bodanese-ZanettiniUniversidade Federal do Rio Grande do Sul (UFRGS), Porto Alegre, RS, Brazil. mhbzanettini@yahoo.com.br.
Alexandro CagliariUniversidade Estadual do Rio Grande do Sul (UERGS), CEP 96816-50, Santa Cruz do Sul, RS, Brazil. alexandro-cagliari@uergs.edu.br.
Universidade Estadual do Rio Grande do Sul · BRUniversidade Federal do Rio Grande do Sul · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Programmed cell death (PCD) is an ordered cell suicide that removes unwanted or damaged cells, playing a role in defense to environmental stresses and pathogen invasion. PCD is component of the life cycle of plants, occurring throughout development from embryogenesis to the death. Metacaspases are cysteine proteases present in plants, fungi, and protists. In certain plant-pathogen interactions, the PCD seems to be mediated by metacaspases. We adopted a comparative genomic approach to identify genes coding for the metacaspases in Viridiplantae. We observed that the metacaspase was divided into types I and II, based on their protein structure. The type I has a metacaspase domain at the C-terminus region, presenting or not a zinc finger motif in the N-terminus region and a prodomain rich in proline. Metacaspase type II does not feature the prodomain and the zinc finger, but has a linker between caspase-like catalytic domains of 20 kDa (p20) and 10 kDa (p10). A high conservation was observed in the zinc finger domain (type I proteins) and in p20 and p10 subunits (types I and II proteins). The phylogeny showed that the metacaspases are divided into three principal groups: type I with and without zinc finger domain and type II metacaspases. The algae and moss are presented as outgroup, suggesting that these three classes of metacaspases originated in the early stages of Viridiplantae, being the absence of the zinc finger domain the ancient condition. The study of metacaspase can clarify their assignment and involvement in plant PCD mechanisms.

Indexed as

Multigene FamilyStress, PhysiologicalAmino Acid SequenceApoptosisBase SequenceCaspasesMolecular Sequence DataPlant ProteinsPlantsCaspasesPlant ProteinsBiotic and abiotic stress responsesMetacaspase gene familyProgrammed cell death

Identifiers

PMID26277721
OpenAlexW1131966549

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.