Evidence map›Paper›PMID 26277720›Full record

ArticleFunctional & integrative genomics2015

Light- and temperature-regulated BjAPY2 may have a role in stem expansion of Brassica juncea.

Liwen Cao, Bin Liu, Junxing Li, Ningning Yu, Xiaoxia Zou, Liping Chen

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In one paragraph

Article in Functional & integrative genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.2field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Article
  3. New Horizons in Plant Cell Signaling.International journal of molecular sciences · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Liwen CaoInstitute of Vegetable Science, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, People's Republic of China. 11216054@zju.edu.cn.
Bin LiuInstitute of Vegetable Science, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, People's Republic of China. lpchstu@zju.edu.cn.
Junxing LiInstitute of Vegetable Science, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, People's Republic of China. 11016052@zju.edu.cn.
Ningning YuInstitute of Vegetable Science, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, People's Republic of China. 21316058@zju.edu.cn.
Xiaoxia ZouInstitute of Vegetable Science, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, People's Republic of China. 21216062@zju.edu.cn.
Liping ChenInstitute of Vegetable Science, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, People's Republic of China. chenliping@zju.edu.cn.
Zhejiang University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tuber mustard (Brassica juncea (L.) Czern. et Coss. var. tumida Tsen et Lee) is an important vegetable crop with a characteristic of expanded stem that is edible. The underlying molecular mechanism of the stem expansion is not well understood. Here, we reported that a total of 51 differentially expressed fragments (DEFs) with three expression patterns during stem expansion of tuber mustard were identified by cDNA-AFLP analysis. Among the DEFs, DEF11 with high homology to Arabidopsis thaliana apyrase 2 (AtAPY2) that encodes an enzyme with ATPase and ADPase activity was development- and tissue-specific. DEF11 was thus renamed as BjAPY2. The expression levels of BjAPY2 increased with the stem expression and were the highest at stage IV, a developmental stage at which the stem expanded most rapidly. In contrast, the BjAPY2 expression levels in leaves were much lower and remained unchanged during leaf development and expansion, suggesting that BjAPY2 was closely associated with the expansion of stems but not of leaves in the tuber mustard. Interestingly, the expression of BjAPY2 was higher in the mustard under short-day (SD) photoperiod (8 h/16 h) than that under long-day (LD) photoperiod (16 h/8 h); similarly, the transcript levels of BjAPY2 were higher in the mustard grown at low temperature (14 °C/12 °C) than that at high temperature (26 °C /24 °C). The SD photoperiod and low temperature were two environmental conditions that favored the mustard stem expansion. Further cloning and analysis of the promoter region of BjAPY2 revealed that there were indeed several types of motifs in the promoter region, including the light and temperature responsive elements. These results suggested that BjAPY2 might play an important role during the stem expansion of the tuber mustard.

Indexed as

Gene Expression Regulation, PlantHeat-Shock ResponsePhotoperiodAmino Acid SequenceApyraseMolecular Sequence DataMustard PlantPlant ProteinsPlant StemsResponse ElementsSunlightApyrasePlant ProteinsBjAPY2cDNA-AFLPDifferentially expression profilePhotoperiodStem expansionTemperatureTuber mustard

Identifiers

PMID26277720
OpenAlexW1462918412

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.