Evidence map›Paper›PMID 26276866›Full record

ArticleJournal of experimental botany2015

Hormone-mediated growth dynamics of the barley pericarp as revealed by magnetic resonance imaging and transcript profiling.

Rainer Pielot, Stefan Kohl, Bertram Manz, Twan Rutten, Diana Weier, Danuše Tarkowská, Jakub Rolčík, Miroslav Strnad, Frank Volke, Hans Weber and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of experimental botany, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. ThePlant-environment interactions (Hoboken, N.J.) · 2021
    Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Rainer PielotLeibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung, D-06466 Gatersleben, Germany.
Stefan KohlLeibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung, D-06466 Gatersleben, Germany.
Bertram ManzFraunhofer Institut für Biomedizinische Technik (IBMT) Simulation, Visualization & Magnetic Resonance, Ensheimer Str. 48, D-66386 St. Ingbert, Germany.
Twan RuttenLeibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung, D-06466 Gatersleben, Germany.
Diana WeierLeibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung, D-06466 Gatersleben, Germany.
Danuše TarkowskáLaboratory of Growth Regulators, Centre of the Region Haná for Biotechnological and Agricultural Research, Institute of Experimental Botany ASCR and Palacký University, Šlechtitelů 11, CZ-78371, Olomouc, Czech Republic.
Jakub RolčíkLaboratory of Growth Regulators, Centre of the Region Haná for Biotechnological and Agricultural Research, Institute of Experimental Botany ASCR and Palacký University, Šlechtitelů 11, CZ-78371, Olomouc, Czech Republic.
Miroslav StrnadLaboratory of Growth Regulators, Centre of the Region Haná for Biotechnological and Agricultural Research, Institute of Experimental Botany ASCR and Palacký University, Šlechtitelů 11, CZ-78371, Olomouc, Czech Republic.
Frank VolkeFraunhofer Institut für Biomedizinische Technik (IBMT) Simulation, Visualization & Magnetic Resonance, Ensheimer Str. 48, D-66386 St. Ingbert, Germany.
Hans WeberLeibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung, D-06466 Gatersleben, Germany weber@ipk-gatersleben.de.
Winfriede WeschkeLeibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung, D-06466 Gatersleben, Germany weber@ipk-gatersleben.de.
Leibniz Institute for Neurobiology · DELeibniz Institute of Plant Genetics and Crop Plant Research · DEPalacký University Olomouc · CZFraunhofer Institute for Biomedical Engineering · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The shape of the maternal pericarp affects cereal grain mass and yield. Pericarp growth was analysed by magnetic resonance imaging (MRI), revealing topological maps of mobile water in developing pericarp of barley (Hordeum vulgare) and displaying tissue regions actively elongating in specific temporal-spatial patterns. Correlation analysis of MRI signals and growth rates reveals that growth in length is mediated by dorsal and also lateral rather than ventral regions. Growth in thickness is related to ventral regions. Switching from dorsal to ventral growth is associated with differential expression of axial regulators of the HD-ZipIII and Kanadi/Ettin types, and NPH3 photoreceptors, suggesting light-mediated auxin re-distribution. Auxin increases with the highest levels in the basal pericarp at 6 days after fertilization (DAF), together with transcriptionally up-regulated auxin transport and signalling. Gibberellin biosynthesis is transcriptionally up-regulated only later, and levels of bioactive gibberellins increase from 7 to 13 DAF, with higher levels in ventral than dorsal regions. Differential gene expression related to cell expansion indicates genes related to apoplast acidification, wall relaxation, sugar cleavage, water transport, and cell wall biosynthesis. Candidate genes potentially involved in pericarp extension are distinguished by their temporal expression, representing potential isoforms responsible for dorsal-mediated early growth in length or ventral-mediated late growth in thickness.

Indexed as

Gene Expression Regulation, PlantGene Expression ProfilingGene Expression Regulation, DevelopmentalGibberellinsHordeumIndoleacetic AcidsMagnetic Resonance ImagingPlant Growth RegulatorsPlant ProteinsSeedsGibberellinsIndoleacetic AcidsPlant Growth RegulatorsPlant ProteinsAuxinbarley pericarpcell expansiondirected growthgibberellic acidgrain lengthgrowth dynamicsmagnetic resonance imagingtranscript profiling.

Identifiers

PMID26276866
PMCPMC4623697
OpenAlexW1910669687

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.