Evidence map›Paper›PMID 26276832›Full record

ArticleThe Plant cell2015

The Transcriptional Coregulator LEUNIG_HOMOLOG Inhibits Light-Dependent Seed Germination in Arabidopsis.

Nayoung Lee, Jeongmoo Park, Keunhwa Kim, Giltsu Choi

Open access · greenAbstract read
In one paragraph

Article in The Plant cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
4.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. PIF transcription factors-versatile plant epigenome landscapers.Frontiers in epigenetics and epigenomics · 2024
    Review
  8. Review
  9. Review
  10. Article
  11. Article
  12. Underlying Biochemical and Molecular Mechanisms for Seed Germination.International journal of molecular sciences · 2022
    Review
  13. Review
  14. Dynamics of Protein Phosphorylation duringInternational journal of molecular sciences · 2022
    Article
  15. Article
  16. Article
  17. Review
  18. International journal of molecular sciences · 2020
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Nayoung LeeDepartment of Biological Sciences, KAIST, Daejeon 305-701, Korea.
Jeongmoo ParkDepartment of Biological Sciences, KAIST, Daejeon 305-701, Korea.
Keunhwa KimDepartment of Biological Sciences, KAIST, Daejeon 305-701, Korea.
Giltsu ChoiDepartment of Biological Sciences, KAIST, Daejeon 305-701, Korea gchoi@kaist.edu.
Korea Advanced Institute of Science and Technology · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

PHYTOCHROME-INTERACTING FACTOR1 (PIF1) is a basic helix-loop-helix transcription factor that inhibits light-dependent seed germination in Arabidopsis thaliana. However, it remains unclear whether PIF1 requires other factors to regulate its direct targets. Here, we demonstrate that LEUNIG_HOMOLOG (LUH), a Groucho family transcriptional corepressor, binds to PIF1 and coregulates its targets. Not only are the transcriptional profiles of the luh and pif1 mutants remarkably similar, more than 80% of the seeds of both genotypes germinate in the dark. We show by chromatin immunoprecipitation that LUH binds a subset of PIF1 targets in a partially PIF1-dependent manner. Unexpectedly, we found LUH binds and coregulates not only PIF1-activated targets but also PIF1-repressed targets. Together, our results indicate LUH functions with PIF1 as a transcriptional coregulator to inhibit seed germination.

Indexed as

ArabidopsisArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsCluster AnalysisGene Expression ProfilingGene Expression Regulation, DevelopmentalGene Expression Regulation, PlantGerminationImmunoblottingLightMutationOligonucleotide Array Sequence AnalysisPlants, Genetically ModifiedPromoter Regions, GeneticProtein BindingRepressor ProteinsArabidopsis ProteinsAt2g20180 protein, ArabidopsisBasic Helix-Loop-Helix ProteinsLUH protein, ArabidopsisRepressor Proteins

Identifiers

PMID26276832
PMCPMC4568510
OpenAlexW2168812372

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.