Evidence map›Paper›PMID 26276116›Full record

ArticleApplied and environmental microbiology2015

Hypothetical protein Avin_16040 as the S-layer protein of Azotobacter vinelandii and its involvement in plant root surface attachment.

Pauline Woan Ying Liew, Bor Chyan Jong, Nazalan Najimudin

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Pauline Woan Ying LiewAgrotechnology and Bioscience Division, Malaysian Nuclear Agency, Bangi, Kajang, Selangor, Malaysia School of Biological Sciences, Universiti Sains Malaysia, Minden, Penang, Malaysia paulineliew@nuclearmalaysia.gov.my nazalan@usm.my.
Bor Chyan JongAgrotechnology and Bioscience Division, Malaysian Nuclear Agency, Bangi, Kajang, Selangor, Malaysia.
Nazalan NajimudinSchool of Biological Sciences, Universiti Sains Malaysia, Minden, Penang, Malaysia paulineliew@nuclearmalaysia.gov.my nazalan@usm.my.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A proteomic analysis of a soil-dwelling, plant growth-promoting Azotobacter vinelandii strain showed the presence of a protein encoded by the hypothetical Avin_16040 gene when the bacterial cells were attached to the Oryza sativa root surface. An Avin_16040 deletion mutant demonstrated reduced cellular adherence to the root surface, surface hydrophobicity, and biofilm formation compared to those of the wild type. By atomic force microscopy (AFM) analysis of the cell surface topography, the deletion mutant displayed a cell surface architectural pattern that was different from that of the wild type. Escherichia coli transformed with the wild-type Avin_16040 gene displayed on its cell surface organized motifs which looked like the S-layer monomers of A. vinelandii. The recombinant E. coli also demonstrated enhanced adhesion to the root surface.

Indexed as

Bacterial AdhesionAzotobacter vinelandiiBiofilmsDNA, BacterialEscherichia coliGene DeletionHydrophobic and Hydrophilic InteractionsMembrane GlycoproteinsMicroscopy, Atomic ForceMolecular Sequence DataOryzaPlant RootsSequence Analysis, DNATransformation, BacterialDNA, BacterialMembrane GlycoproteinsS-layer proteins

Identifiers

PMID26276116
PMCPMC4592878

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.