Evidence map›Paper›PMID 26276113›Full record

ArticleApplied and environmental microbiology2015

A New Class of Tungsten-Containing Oxidoreductase in Caldicellulosiruptor, a Genus of Plant Biomass-Degrading Thermophilic Bacteria.

Israel M Scott, Gabe M Rubinstein, Gina L Lipscomb, Mirko Basen, Gerrit J Schut, Amanda M Rhaesa, W Andrew Lancaster, Farris L Poole, Robert M Kelly, Michael W W Adams

Open access · greenAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 29 citations in OpenAlex.

  1. Review
  2. Article
  3. Metabolic engineering ofApplied and environmental microbiology · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Characterization of a Metal-ResistantFrontiers in microbiology · 2020
    Article
  10. The thermophilic biomass-degrading bacteriumThe Journal of biological chemistry · 2019
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Israel M ScottDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia, USA.
Gabe M RubinsteinDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia, USA.
Gina L LipscombDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia, USA.
Mirko BasenDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia, USA.
Gerrit J SchutDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia, USA.
Amanda M RhaesaDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia, USA.
W Andrew LancasterDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia, USA.
Farris L PooleDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia, USA.
Robert M KellyDepartment of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, North Carolina, USA.
Michael W W AdamsDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia, USA adams@bmb.uga.edu.
University of Georgia · USNorth Carolina State University · US

Funding

Purchase of a Thermo Fisher Scientific LTQ Orbitrap XL Mass SpectrometerS10RR028859 · NCRR · UNIVERSITY OF GEORGIA · PI AMSTER, I JONATHAN · 2011 to 2011
$832k
6 · The paper itself

Abstract

Caldicellulosiruptor bescii grows optimally at 78°C and is able to decompose high concentrations of lignocellulosic plant biomass without the need for thermochemical pretreatment. C. bescii ferments both C5 and C6 sugars primarily to hydrogen gas, lactate, acetate, and CO2 and is of particular interest for metabolic engineering applications given the recent availability of a genetic system. Developing optimal strains for technological use requires a detailed understanding of primary metabolism, particularly when the goal is to divert all available reductant (electrons) toward highly reduced products such as biofuels. During an analysis of the C. bescii genome sequence for oxidoreductase-type enzymes, evidence was uncovered to suggest that the primary redox metabolism of C. bescii has a completely uncharacterized aspect involving tungsten, a rarely used element in biology. An active tungsten utilization pathway in C. bescii was demonstrated by the heterologous production of a tungsten-requiring, aldehyde-oxidizing enzyme (AOR) from the hyperthermophilic archaeon Pyrococcus furiosus. Furthermore, C. bescii also contains a tungsten-based AOR-type enzyme, here termed XOR, which is phylogenetically unique, representing a completely new member of the AOR tungstoenzyme family. Moreover, in C. bescii, XOR represents ca. 2% of the cytoplasmic protein. XOR is proposed to play a key, but as yet undetermined, role in the primary redox metabolism of this cellulolytic microorganism.

Indexed as

AldehydesBacterial ProteinsGram-Positive BacteriaOxidation-ReductionOxidoreductasesPyrococcus furiosusTungstenAldehydesBacterial ProteinsOxidoreductasesTungsten

Identifiers

PMID26276113
PMCPMC4579436
OpenAlexW1942418209

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.