Evidence map›Paper›PMID 26273581›Full record

ArticleMolecular based mathematical biology2015

Nonlocal Electrostatics in Spherical Geometries Using Eigenfunction Expansions of Boundary-Integral Operators.

Jaydeep P Bardhan, Matthew G Knepley, Peter Brune

Abstract read
In one paragraph

Article in Molecular based mathematical biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

3 authors.

Jaydeep P BardhanDept. of Mechanical and Industrial Engineering, Northeastern University, Boston MA 02115.
Matthew G KnepleyComputation Institute, University of Chicago, Chicago IL 60637.
Peter BruneGoogle Inc., Mountain View CA 94041.

Funding

Understanding pH-Dependent Protein Behavior Using Advanced Continuum TheoryR21GM102642 · NIGMS · NORTHEASTERN UNIVERSITY · PI BARDHAN, JAYDEEP PORTER · 2012 to 2013
$376k
NIGMS NIH HHS R21 GM102642
6 · The paper itself

Abstract

In this paper, we present an exact, infinite-series solution to Lorentz nonlocal continuum electrostatics for an arbitrary charge distribution in a spherical solute. Our approach relies on two key steps: (1) re-formulating the PDE problem using boundary-integral equations, and (2) diagonalizing the boundary-integral operators using the fact that their eigenfunctions are the surface spherical harmonics. To introduce this uncommon approach for calculations in separable geometries, we first re-derive Kirkwood's classic results for a protein surrounded concentrically by a pure-water ion-exclusion (Stern) layer and then a dilute electrolyte, which is modeled with the linearized Poisson-Boltzmann equation. The eigenfunction-expansion approach provides a computationally efficient way to test some implications of nonlocal models, including estimating the reasonable range of the nonlocal length-scale parameter λ. Our results suggest that nonlocal solvent response may help to reduce the need for very high dielectric constants in calculating pH-dependent protein behavior, though more sophisticated nonlocal models are needed to resolve this question in full. An open-source MATLAB implementation of our approach is freely available online.

Identifiers

PMID26273581
PMCPMC4530806

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.