Evidence map›Paper›PMID 26273275›Full record

ArticleBrazilian journal of microbiology : [publication of the Brazilian Society for Microbiology]2015

Molecular characterization of Brazilian equid herpesvirus type 1 strains based on neuropathogenicity markers.

Enio Mori, Maria do Carmo C S H Lara, Elenice M S Cunha, Eliana M C Villalobos, Claudia M C Mori, Rodrigo M Soares, Paulo E Brandão, Wilson R Fernandes, Leonardo J Richtzenhain

Open access · hybridAbstract read
In one paragraph

Article in Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology], 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Viral Diseases that Affect Donkeys and Mules.Animals : an open access journal from MDPI · 2020
    Review
  4. Viruses · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Enio MoriInstituto Pasteur, São Paulo, SP, Brasil, Instituto Pasteur, São Paulo, SP, Brazil. ; Universidade de São Paulo, Departamento de Patologia, Faculdade de Medicina Veterinária e Ciência Animal, Universidade de São Paulo, São Paulo, SP, Brasil, Departamento de Patologia, Faculdade de Medicina Veterinária e Ciência Animal, Universidade de São Paulo, São Paulo, SP, Brazil.
Maria do Carmo C S H LaraInstituto Biológico, Instituto Biológico, São Paulo, SP, Brasil, Instituto Biológico, São Paulo, SP, Brazil.
Elenice M S CunhaInstituto Biológico, Instituto Biológico, São Paulo, SP, Brasil, Instituto Biológico, São Paulo, SP, Brazil.
Eliana M C VillalobosInstituto Biológico, Instituto Biológico, São Paulo, SP, Brasil, Instituto Biológico, São Paulo, SP, Brazil.
Claudia M C MoriUniversidade de São Paulo, Departamento de Patologia, Faculdade de Medicina Veterinária e Ciência Animal, Universidade de São Paulo, São Paulo, SP, Brasil, Departamento de Patologia, Faculdade de Medicina Veterinária e Ciência Animal, Universidade de São Paulo, São Paulo, SP, Brazil.
Rodrigo M SoaresUniversidade de São Paulo, Departamento de Medicina Veterinária Preventiva e Saúde Animal, Faculdade de Medicina Veterinária e Zootecnia, Universidade de São Paulo, São Paulo, SP, Brasil, Departamento de Medicina Veterinária Preventiva e Saúde Animal, Faculdade de Medicina Veterinária e Zootecnia, Universidade de São Paulo, São Paulo, SP, Brazil.
Paulo E BrandãoUniversidade de São Paulo, Departamento de Medicina Veterinária Preventiva e Saúde Animal, Faculdade de Medicina Veterinária e Zootecnia, Universidade de São Paulo, São Paulo, SP, Brasil, Departamento de Medicina Veterinária Preventiva e Saúde Animal, Faculdade de Medicina Veterinária e Zootecnia, Universidade de São Paulo, São Paulo, SP, Brazil.
Wilson R FernandesUniversidade de São Paulo, Departamento de Clínica Médica, Faculdade de Medicina Veterinária e Ciência Animal, Universidade de São Paulo, São Paulo, SP, Brasil, Departamento de Clínica Médica, Faculdade de Medicina Veterinária e Ciência Animal, Universidade de São Paulo, São Paulo, SP, Brazil.
Leonardo J RichtzenhainUniversidade de São Paulo, Departamento de Medicina Veterinária Preventiva e Saúde Animal, Faculdade de Medicina Veterinária e Zootecnia, Universidade de São Paulo, São Paulo, SP, Brasil, Departamento de Medicina Veterinária Preventiva e Saúde Animal, Faculdade de Medicina Veterinária e Zootecnia, Universidade de São Paulo, São Paulo, SP, Brazil.
Fundação de Estudo e Pesquisa em Medicina Veterinária e Zootecnia · BRInstituto Biológico · BRUniversidade de São Paulo · BRHospital das Clínicas da Faculdade de Medicina da Universidade de São Paulo · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Partial nucleotide sequences of ORF72 (glycoprotein D, gD), ORF64 (infected cell protein 4, ICP4) and ORF30 (DNA polymerase) genes were compared with corresponding sequences of EHV-1 reference strains to characterize the molecular variability of Brazilian strains. Virus isolation assays were applied to 74 samples including visceral tissue, total blood, cerebrospinal fluid (CSF) and nasal swabs of specimens from a total of 64 animals. Only one CSF sample (Iso07/05 strain) was positive by virus isolation in cell culture. EHV-1 Iso07/05 neurologic strain and two abortion visceral tissues samples (Iso11/06 and Iso33/06) were PCR-positive for ORF33 (glycoprotein B, gB) gene of EHV-1. A sequence analysis of the ORF72, ORF64 and ORF30 genes from three EHV-1 archival strains (A3/97, A4/72, A9/92) and three clinical samples (Iso07/05, Iso11/06 and Iso33/06) suggested that among Brazilian EHV-1 strains, the amplified region of the gD gene sequence is highly conserved. Additionally, the analysis of ICP4 gene showed high nucleotide and amino acid identities when compared with genotype P strains, suggesting that the EHV-1 Brazilian strains belonged to the same group. All the EHV-1 Brazilian strains were classified as non-neuropathogenic variants (N752) based on the ORF30 analysis. These findings indicate a high conservation of the gD-, ICP4- and ORF30-encoding sequences. Different pathotypes of the EHV-1 strain might share identical genes with no specific markers, and tissue tropism is not completely dependent on the gD envelope, immediate-early ICP4 and DNA polymerase proteins.

Indexed as

Genetic VariationAnimalsBrazilCluster AnalysisConserved SequenceDNA, ViralGenotypeHerpesviridae InfectionsHerpesvirus 1, EquidHorse DiseasesHorsesMolecular Sequence DataOpen Reading FramesPhylogenySequence Analysis, DNASequence Homology, Amino AcidDNA, ViralDNA polymerase gene (ORF30)equid Brazilian herpesvirusequid herpesvirus type 1glycoprotein D gene (ORF72)ICP4 gene (ORF64)

Identifiers

PMID26273275
PMCPMC4507552
OpenAlexW1520233259

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.