Evidence map›Paper›PMID 26272054›Full record

ArticleJournal of medical microbiology2015

Genetic characterization of three qnrS1-harbouring multidrug-resistance plasmids and qnrS1-containing transposons circulating in Ho Chi Minh City, Vietnam.

Vien Le, Nguyen Thi Khanh Nhu, Ana Cerdeno-Tarraga, James I Campbell, Ha Thanh Tuyen, Tran Do Hoang Nhu, Pham Thi Thanh Tam, Constance Schultsz, Guy Thwaites, Nicholas R Thomson and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of medical microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.3field-weighted citation impact, top 49% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 7 institutions in 5 countries.

Vien LeHospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Nguyen Thi Khanh NhuHospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Ana Cerdeno-TarragaEMBL-European Bioinformatics Institute, Hinxton, Cambridge, UK.
James I CampbellHospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Ha Thanh TuyenHospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Tran Do Hoang NhuHospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Pham Thi Thanh TamHospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Constance SchultszDepartment of Medical Microbiology, Academic Medical Centre, University of Amsterdam, The Netherlands.
Guy ThwaitesHospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Nicholas R ThomsonWellcome Trust Sanger Institute, Hinxton, Cambridge, UK.
Stephen BakerCentre for Tropical Medicine, Nuffield Department of Clinical Medicine, Oxford University, UK.
Hospital for Tropical Diseases · VNOxford University Clinical Research Unit · VNEuropean Bioinformatics Institute · GBNuffield Orthopaedic Centre · GBUniversity of Amsterdam · NLUniversity of California, San Francisco · USWellcome Sanger Institute · GB

Funding

Wellcome Trust 089276Wellcome Trust 089276/2/09/2Wellcome Trust 100087Wellcome Trust 100087/Z/12/Z
6 · The paper itself

Abstract

Plasmid-mediated quinolone resistance (PMQR) refers to a family of closely related genes that confer decreased susceptibility to fluoroquinolones. PMQR genes are generally associated with integrons and/or plasmids that carry additional antimicrobial resistance genes active against a range of antimicrobials. In Ho Chi Minh City (HCMC), Vietnam, we have previously shown a high frequency of PMQR genes within commensal Enterobacteriaceae. However, there are limited available sequence data detailing the genetic context in which the PMQR genes reside, and a lack of understanding of how these genes spread across the Enterobacteriaceae. Here, we aimed to determine the genetic background facilitating the spread and maintenance of qnrS1, the dominant PMQR gene circulating in HCMC. We sequenced three qnrS1-carrying plasmids in their entirety to understand the genetic context of these qnrS1-embedded plasmids and also the association of qnrS1-mediated quinolone resistance with other antimicrobial resistance phenotypes. Annotation of the three qnrS1-containing plasmids revealed a qnrS1-containing transposon with a closely related structure. We screened 112 qnrS1-positive commensal Enterobacteriaceae isolated in the community and in a hospital in HCMC to detect the common transposon structure. We found the same transposon structure to be present in 71.4 % (45/63) of qnrS1-positive hospital isolates and in 36.7 % (18/49) of qnrS1-positive isolates from the community. The resulting sequence analysis of the qnrS1 environment suggested that qnrS1 genes are widely distributed and are mobilized on elements with a common genetic background. Our data add additional insight into mechanisms that facilitate resistance to multiple antimicrobials in Gram-negative bacteria in Vietnam.

Indexed as

DNA Transposable ElementsDrug Resistance, Multiple, BacterialPlasmidsAnti-Bacterial AgentsCommunity-Acquired InfectionsCross InfectionDNA, BacterialEnterobacteriaceaeEnterobacteriaceae InfectionsHumansInterspersed Repetitive SequencesMolecular Sequence DataQuinolonesSequence Analysis, DNAVietnamAnti-Bacterial AgentsDNA, BacterialDNA Transposable ElementsQuinolones

Identifiers

PMID26272054
PMCPMC4635468
OpenAlexW2107139608

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.