Evidence map›Paper›PMID 26268529›Full record

ArticleMolecular pharmacology2015

Breathing Stimulant Compounds Inhibit TASK-3 Potassium Channel Function Likely by Binding at a Common Site in the Channel Pore.

Rikki H Chokshi, Aaron T Larsen, Brijesh Bhayana, Joseph F Cotten

Open access · bronzeAbstract read
In one paragraph

Article in Molecular pharmacology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 36 citations in OpenAlex.

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  17. Low pHThe Journal of physiology · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Rikki H ChokshiDepartment of Anesthesia, Critical Care, and Pain Medicine (R.H.C., J.F.C.), Center for Computational and Integrative Biology, and Department of Molecular Biology (A.T.L.), and Department of Dermatology (B.B.), Massachusetts General Hospital, Boston, Massachusetts.
Aaron T LarsenDepartment of Anesthesia, Critical Care, and Pain Medicine (R.H.C., J.F.C.), Center for Computational and Integrative Biology, and Department of Molecular Biology (A.T.L.), and Department of Dermatology (B.B.), Massachusetts General Hospital, Boston, Massachusetts.
Brijesh BhayanaDepartment of Anesthesia, Critical Care, and Pain Medicine (R.H.C., J.F.C.), Center for Computational and Integrative Biology, and Department of Molecular Biology (A.T.L.), and Department of Dermatology (B.B.), Massachusetts General Hospital, Boston, Massachusetts.
Joseph F CottenDepartment of Anesthesia, Critical Care, and Pain Medicine (R.H.C., J.F.C.), Center for Computational and Integrative Biology, and Department of Molecular Biology (A.T.L.), and Department of Dermatology (B.B.), Massachusetts General Hospital, Boston, Massachusetts jcotten@mgh.harvard.edu.
Massachusetts General Hospital · US

Funding

TASK Potassium Channel Antagonists to Treat Opioid Depression of BreathingR01HL117871 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI COTTEN, JOSEPH F · 2013 to 2017
$2.1M
NHLBI NIH HHS HL117871NHLBI NIH HHS R01 HL117871
6 · The paper itself

Abstract

Compounds PKTHPP (1-{1-[6-(biphenyl-4-ylcarbonyl)-5,6,7,8-tetrahydropyrido[4,3-d]-pyrimidin-4-yl]piperidin-4-yl}propan-1-one), A1899 (2''-[(4-methoxybenzoylamino)methyl]biphenyl-2-carboxylic acid 2,4-difluorobenzylamide), and doxapram inhibit TASK-1 (KCNK3) and TASK-3 (KCNK9) tandem pore (K2P) potassium channel function and stimulate breathing. To better understand the molecular mechanism(s) of action of these drugs, we undertook studies to identify amino acid residues in the TASK-3 protein that mediate this inhibition. Guided by homology modeling and molecular docking, we hypothesized that PKTHPP and A1899 bind in the TASK-3 intracellular pore. To test our hypothesis, we mutated each residue in or near the predicted PKTHPP and A1899 binding site (residues 118-128 and 228-248), individually, to a negatively charged aspartate. We quantified each mutation's effect on TASK-3 potassium channel concentration response to PKTHPP. Studies were conducted on TASK-3 transiently expressed in Fischer rat thyroid epithelial monolayers; channel function was measured in an Ussing chamber. TASK-3 pore mutations at residues 122 (L122D, E, or K) and 236 (G236D) caused the IC50 of PKTHPP to increase more than 1000-fold. TASK-3 mutants L122D, G236D, L239D, and V242D were resistant to block by PKTHPP, A1899, and doxapram. Our data are consistent with a model in which breathing stimulant compounds PKTHPP, A1899, and doxapram inhibit TASK-3 function by binding at a common site within the channel intracellular pore region, although binding outside the channel pore cannot yet be excluded.

Indexed as

Amino Acid SequenceAnimalsBenzamidesBenzeneacetamidesBinding SitesCells, CulturedDoxapramMolecular Docking SimulationMolecular Sequence DataMutagenesisPotassium Channels, Tandem Pore DomainRatsRats, Inbred F344Respiratory System AgentsStructure-Activity RelationshipA 1899BenzamidesBenzeneacetamidesDoxapramKCNK9 protein, humanPotassium Channels, Tandem Pore DomainRespiratory System Agents

Identifiers

PMID26268529
PMCPMC4613942
OpenAlexW1908670897

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.