Evidence map›Paper›PMID 26268245›Full record

ArticleG3 (Bethesda, Md.)2015

Splicing Machinery Facilitates Post-Transcriptional Regulation by FBFs and Other RNA-Binding Proteins in Caenorhabditis elegans Germline.

Preston Novak, Xiaobo Wang, Mary Ellenbecker, Sara Feilzer, Ekaterina Voronina

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Analysis of the C. elegans Germline Stem Cell Pool.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  3. Article
  4. Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Preston NovakDivision of Biological Sciences, University of Montana, Missoula, Montana 59812.
Xiaobo WangDivision of Biological Sciences, University of Montana, Missoula, Montana 59812.
Mary EllenbeckerDivision of Biological Sciences, University of Montana, Missoula, Montana 59812.
Sara FeilzerDivision of Biological Sciences, University of Montana, Missoula, Montana 59812.
Ekaterina VoroninaDivision of Biological Sciences, University of Montana, Missoula, Montana 59812 ekaterina.voronina@umontana.edu.ORCID http://orcid.org/0000-0002-0194-4260
University of Montana · US

Funding

Surveillance genome sequencing to detect SARS-CoV-2 virus variants in MontanaP20GM103546 · NIGMS · UNIVERSITY OF MONTANA · PI BOWLER, BRUCE E · 2012 to 2021
$19.2M
P granules and control of germ cells developmentR01GM109053 · NIGMS · UNIVERSITY OF MONTANA · PI VORONINA, EKATERINA · 2014 to 2022
$2.5M
NIGMS NIH HHS P20 GM103546NIGMS NIH HHS P20GM103546NIGMS NIH HHS R01 GM109053NIGMS NIH HHS R01GM109053
6 · The paper itself

Abstract

Genetic interaction screens are an important approach for understanding complex regulatory networks governing development. We used a genetic interaction screen to identify cofactors of FBF-1 and FBF-2, RNA-binding proteins that regulate germline stem cell proliferation in Caenorhabditis elegans. We found that components of splicing machinery contribute to FBF activity as splicing factor knockdowns enhance sterility of fbf-1 and fbf-2 single mutants. This sterility phenocopied multiple aspects of loss of fbf function, suggesting that splicing factors contribute to stem cell maintenance. However, previous reports indicate that splicing factors instead promote the opposite cell fate, namely, differentiation. We explain this discrepancy by proposing that splicing factors facilitate overall RNA regulation in the germline. Indeed, we find that loss of splicing factors produces synthetic phenotypes with a mutation in another RNA regulator, FOG-1, but not with a mutation in a gene unrelated to posttranscriptional regulation (dhc-1). We conclude that inefficient pre-mRNA splicing may interfere with multiple posttranscriptional regulatory events, which has to be considered when interpreting results of genetic interaction screens.

Indexed as

RNA Processing, Post-TranscriptionalRNA SplicingAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsGene Knockdown TechniquesGenes, LethalGerm CellsMutationRNA-Binding ProteinsRNA InterferenceCaenorhabditis elegans ProteinsRNA-Binding ProteinsgermlineRNA-binding proteinsplicing factorstem cells

Identifiers

PMID26268245
PMCPMC4592988
OpenAlexW2215568284

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.