Evidence map›Paper›PMID 26267598›Full record

ArticleScientific reports2015

Transcriptomic and metabolomic analyses identify a role for chlorophyll catabolism and phytoalexin during Medicago nonhost resistance against Asian soybean rust.

Yasuhiro Ishiga, Srinivasa Rao Uppalapati, Upinder S Gill, David Huhman, Yuhong Tang, Kirankumar S Mysore

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Breeding science · 2022
    Article
  7. Article
  8. Article
  9. In-Depth Characterization ofFrontiers in plant science · 2022
    Article
  10. Review
  11. Article
  12. Diversity and Function of Appressoria.Pathogens (Basel, Switzerland) · 2021
    Review
  13. Article
  14. Biological Activities and Chemistry of Triterpene Saponins fromEvidence-based complementary and alternative medicine : eCAM · 2021
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Genomics of Plant Disease Resistance in Legumes.Frontiers in plant science · 2019
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Yasuhiro Ishiga1] Plant Biology Division, The Samuel Roberts Noble Foundation, Ardmore, OK 73401, USA [2] Faculty of Life and Environmental Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8572, Japan.
Srinivasa Rao UppalapatiPlant Biology Division, The Samuel Roberts Noble Foundation, Ardmore, OK 73401, USA.
Upinder S GillPlant Biology Division, The Samuel Roberts Noble Foundation, Ardmore, OK 73401, USA.
David HuhmanPlant Biology Division, The Samuel Roberts Noble Foundation, Ardmore, OK 73401, USA.
Yuhong TangPlant Biology Division, The Samuel Roberts Noble Foundation, Ardmore, OK 73401, USA.
Kirankumar S MysorePlant Biology Division, The Samuel Roberts Noble Foundation, Ardmore, OK 73401, USA.
Noble Research Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Asian soybean rust (ASR) caused by Phakopsora pachyrhizi is a devastating foliar disease affecting soybean production worldwide. Understanding nonhost resistance against ASR may provide an avenue to engineer soybean to confer durable resistance against ASR. We characterized a Medicago truncatula-ASR pathosystem to study molecular mechanisms of nonhost resistance. Although urediniospores formed appressoria and penetrated into epidermal cells of M. truncatula, P. pachyrhizi failed to sporulate. Transcriptomic analysis revealed the induction of phenylpropanoid, flavonoid and isoflavonoid metabolic pathway genes involved in the production of phytoalexin medicarpin in M. truncatula upon infection with P. pachyrhizi. Furthermore, genes involved in chlorophyll catabolism were induced during nonhost resistance. We further characterized one of the chlorophyll catabolism genes, Stay-green (SGR), and demonstrated that the M. truncatula sgr mutant and alfalfa SGR-RNAi lines showed hypersensitive-response-like enhanced cell death upon inoculation with P. pachyrhizi. Consistent with transcriptomic analysis, metabolomic analysis also revealed the accumulation of medicarpin and its intermediate metabolites. In vitro assay showed that medicarpin inhibited urediniospore germination and differentiation. In addition, several triterpenoid saponin glycosides accumulated in M. truncatula upon inoculation with P. pachyrhizi. In summary, using multi-omic approaches, we identified a correlation between phytoalexin production and M. truncatula defense responses against ASR.

Indexed as

MetabolomeTranscriptomeChlorophyllDisease ResistanceGenes, PlantGerminationMedicagoMetabolic Networks and PathwaysPhakopsora pachyrhiziPhytoalexinsPterocarpansReactive Oxygen SpeciesSaponinsSesquiterpenesSpores, FungalTriterpenesChlorophyllmedicarpinPhytoalexinsPterocarpansReactive Oxygen SpeciesSaponinsSesquiterpenesTriterpenes

Identifiers

PMID26267598
PMCPMC4533520
OpenAlexW2402709701

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.