Evidence map›Paper›PMID 26265703›Full record

ArticleGenetics2015

The Spontaneous Mutation Rate in the Fission Yeast Schizosaccharomyces pombe.

Ashley Farlow, Hongan Long, Stéphanie Arnoux, Way Sung, Thomas G Doak, Magnus Nordborg, Michael Lynch

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 81 papers.

0numbers the graph read from it
0cells of the map it votes in
81citing papers in PubMed
11.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

81 citing papers in PubMed, 156 citations in OpenAlex.

  1. Article
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  7. Investigating Fission Yeast Mutagenesis Using Canavanine Sensitivity Assays.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  8. Autochthonous Blastomyces dermatitidis, India.Emerging infectious diseases · 2024
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Recent insights into the evolution of mutation rates in yeast.Current opinion in genetics & development · 2022
    Review
  17. Extensive sampling ofGenome research · 2022
    Article
  18. Article
  19. Article
  20. Article

21 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Ashley FarlowGregor Mendel Institute of Molecular Plant Biology, 1030 Vienna, Austria Institute of Population Genetics, 1210 Vetmeduni Vienna, Austria ashley.farlow@gmail.com milynch@indiana.edu.
Hongan LongDepartment of Biology, Indiana University, Bloomington, Indiana 47405.
Stéphanie ArnouxGregor Mendel Institute of Molecular Plant Biology, 1030 Vienna, Austria.
Way SungDepartment of Biology, Indiana University, Bloomington, Indiana 47405.
Thomas G DoakDepartment of Biology, Indiana University, Bloomington, Indiana 47405 School of Informatics and Computing, Indiana University, Bloomington, Indiana 47405.
Magnus NordborgGregor Mendel Institute of Molecular Plant Biology, 1030 Vienna, Austria.
Michael LynchDepartment of Biology, Indiana University, Bloomington, Indiana 47405 ashley.farlow@gmail.com milynch@indiana.edu.
Gregor Mendel Institute of Molecular Plant Biology · ATIndiana University Bloomington · USUniversity of Veterinary Medicine Vienna · AT

Funding

The Rate and Molecular Spectrum of Spontaneous MutationsR01GM036827 · NIGMS · UNIVERSITY OF OREGON · PI LYNCH, MICHAEL R · 1988 to 2016
$5.7M
Population Genomics of Daphnia pulexR01GM101672 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI LYNCH, MICHAEL R · 2013 to 2016
$2.3M
NIGMS NIH HHS R01 GM036827NIGMS NIH HHS R01 GM101672NIGMS NIH HHS R01GM101672
6 · The paper itself

Abstract

The rate at which new mutations arise in the genome is a key factor in the evolution and adaptation of species. Here we describe the rate and spectrum of spontaneous mutations for the fission yeast Schizosaccharomyces pombe, a key model organism with many similarities to higher eukaryotes. We undertook an ∼1700-generation mutation accumulation (MA) experiment with a haploid S. pombe, generating 422 single-base substitutions and 119 insertion-deletion mutations (indels) across the 96 replicates. This equates to a base-substitution mutation rate of 2.00 × 10(-10) mutations per site per generation, similar to that reported for the distantly related budding yeast Saccharomyces cerevisiae. However, these two yeast species differ dramatically in their spectrum of base substitutions, the types of indels (S. pombe is more prone to insertions), and the pattern of selection required to counteract a strong AT-biased mutation rate. Overall, our results indicate that GC-biased gene conversion does not play a major role in shaping the nucleotide composition of the S. pombe genome and suggest that the mechanisms of DNA maintenance may have diverged significantly between fission and budding yeasts. Unexpectedly, CpG sites appear to be excessively liable to mutation in both species despite the likely absence of DNA methylation.

Indexed as

Mutation RateAmino Acid SequenceDNAGene Expression Regulation, FungalHaploidyINDEL MutationMutationSaccharomyces cerevisiaeSchizosaccharomycesDNAbiased gene conversioneffective population sizefission yeastmutation accumulation

Identifiers

PMID26265703
PMCPMC4596680
OpenAlexW1861303592

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.