Evidence map›Paper›PMID 26265699›Full record

ArticleBlood2015

Genetics of glucocorticoid-associated osteonecrosis in children with acute lymphoblastic leukemia.

Seth E Karol, Wenjian Yang, Sara L Van Driest, Tamara Y Chang, Sue Kaste, Erica Bowton, Melissa Basford, Lisa Bastarache, Dan M Roden, Joshua C Denny and 18 more

2 registry-linked trialsOpen access · bronzeAbstract read
In one paragraph

Article in Blood, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to 2 registered trials, which are not on this map. Cited by 84 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
84citing papers in PubMed, 3 pooled it
10.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT00075725 phase3completednot on this map

High Risk B-Precursor Acute Lymphoblastic Leukemia (ALL)

TypeinterventionalSponsorChildren's Oncology GroupRan2003 to 2021Enrolled3,154ConditionsAcute Lymphoblastic Leukemia, Adult B Acute Lymphoblastic Leukemia, Childhood B Acute Lymphoblastic LeukemiaArmsCyclophosphamide, Cytarabine, Daunorubicin Hydrochloride, Dexamethasone, Doxorubicin Hydrochloride
NCT00137111 phase3completednot on this map

Total XV - Total Therapy Study XV for Newly Diagnosed Patients With Acute Lymphoblastic Leukemia

TypeinterventionalSponsorSt. Jude Children's Research HospitalRan2000 to 2014Enrolled501ConditionsLymphoblastic Leukemia, AcuteArmsPrednisone, Dexamethasone, Vincristine, Daunorubicin, Doxorubicin, L-asparaginase, PEG-L-asparaginase, Erwinia asparaginase, Methotrexate, Cyclophosphamide, Cytarabine, Etoposide, Mercaptopurine, Imatinib, chemotherapy, intrathecal chemotherapy
3 · Its place in the literature

Who cites it

84 citing papers in PubMed, 3 syntheses or guidelines pooled it, 117 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Osteonecrosis of the femoral head: genetic basis.International orthopaedics · 2019
    Pooled it
  4. Trial
  5. Trial
  6. Trial
  7. Trial
  8. Trial
  9. Article
  10. Review
  11. Article
  12. Review
  13. Review
  14. Review
  15. Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Review

24 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

28 authors at 11 institutions in 1 country.

Seth E KarolDepartment of Oncology and.
Wenjian YangDepartment of Pharmaceutical Sciences, St. Jude Children's Research Hospital, Memphis, TN;
Sara L Van DriestDepartment of Pediatrics, Vanderbilt University Medical Center, Nashville, TN;
Tamara Y ChangDepartment of Oncology and.
Sue KasteDepartment of Radiological Sciences, St. Jude Children's Research Hospital, Memphis, TN; Department of Radiology, University of Tennessee, Memphis, TN;
Erica BowtonOffice of Research.
Melissa BasfordOffice of Research.
Lisa BastaracheDepartment of Biomedical Informatics.
Dan M RodenDepartment of Pharmacology, and Department of Medicine, Vanderbilt University Medical Center, Nashville, TN;
Joshua C DennyDepartment of Biomedical Informatics, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN;
Eric LarsenDepartment of Pediatrics, Maine Medical Center, Portland, ME;
Naomi WinickDepartment of Pediatrics, University of Texas Southwestern Medical Center, Dallas, TX;
William L CarrollDepartment of Pediatrics, New York University Langone Medical Center, New York, NY;
Cheng ChengDepartment of Biostatistics, St. Jude Children's Research Hospital, Memphis, TN;
Deqing PeiDepartment of Biostatistics, St. Jude Children's Research Hospital, Memphis, TN;
Christian A FernandezDepartment of Pharmaceutical Sciences, St. Jude Children's Research Hospital, Memphis, TN;
Chengcheng LiuDepartment of Pharmaceutical Sciences, St. Jude Children's Research Hospital, Memphis, TN;
Colton SmithDepartment of Pharmaceutical Sciences, St. Jude Children's Research Hospital, Memphis, TN;
Mignon L LohDepartment of Pediatrics, University of California School of Medicine, San Francisco, CA;
Elizabeth A RaetzDepartment of Pediatrics, University of Utah, Salt Lake City, UT;
Stephen P HungerDepartment of Pediatrics, Children's Hospital of Philadelphia, Philadelphia, PA;
Paul ScheetDepartment of Epidemiology, University of Texas MD Anderson Cancer Center, Houston, TX;
Sima JehaDepartment of Oncology and.
Ching-Hon PuiDepartment of Oncology and.
William E EvansDepartment of Pharmaceutical Sciences, St. Jude Children's Research Hospital, Memphis, TN;
Meenakshi DevidasDepartment of Biostatistics, Colleges of Medicine, Public Health and Health Professions, University of Florida, Gainesville, FL; and.
Leonard A MattanoHARP Pharma Consulting, Mystic, CT.
Mary V RellingDepartment of Pharmaceutical Sciences, St. Jude Children's Research Hospital, Memphis, TN;
St. Jude Children's Research Hospital · USVanderbilt University Medical Center · USVA Office of Research and Development · USChildren's Hospital of Philadelphia · USMaine Medical Center · USNYU Langone Health · USThe University of Texas MD Anderson Cancer Center · USThe University of Texas Southwestern Medical Center · USUniversity of California, San Francisco · USUniversity of Florida · USUniversity of Utah · US

Funding

COG FOREIGN ACCRUALU10CA098543 · NCI · NATIONAL CHILDHOOD CANCER FOUNDATION · PI ADAMSON, PETER C. · 2003 to 2013
$335.5M
Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
COG SDMC - Statistics CoreU10CA180899 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI TODD A ALONZO · 2014 to 2026
$132.8M
Children's Oncology Group Statistics &Data Center GrantU10CA098413 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI DEVIDAS, MEENAKSHI · 2003 to 2013
$67.5M
The Vanderbilt Institute for Clinical and Translational Research (VICTR)UL1TR000445 · NCATS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI BERNARD, GORDON RAPHAEL · 2012 to 2016
$41.4M
CPML - Project 3: Genome-wide Studies of Adverse EffectsP50GM115279 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI RELLING, MARY V · 2015 to 2019
$15.1M
Support for Human Specimen Banking in NCI-Supported Cancer Clinical TrialsU24CA114766 · NCI · RESEARCH INST NATIONWIDE CHILDREN'S HOSP · PI RAMIREZ MILAN, NILSA DEL CARMEN · 2005 to 2014
$14.5M
CLINICAL PHARMACOLOGY TRAINING PROGRAMT32GM007569 · NIGMS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Bjorn C Knollmann · 1985 to 2026
$12.4M
PHARMACOGENOMICS OF CHILDHOOD LEUKEMIA (ALL)R37CA036401 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI EVANS, WILLIAM E · 1987 to 2014
$9.7M
PAARK4Kids-Pharmacogenomics of Anticancer Agents Research in ChildrenU01GM092666 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI RELLING, MARY V · 2010 to 2014
$8.9M
Vanderbilt Genome-Electronic Records ProjectU01HG004603 · NHGRI · VANDERBILT UNIVERSITY · PI RODEN, DAN M · 2007 to 2011
$7.3M
VESPA: Vanderbilt Electronic Systems for Pharmacogenomic AssessmentRC2GM092618 · NIGMS · VANDERBILT UNIVERSITY · PI DENNY, JOSHUA C., RODEN, DAN M · 2009 to 2010
$6.4M
NCATS NIH HHS UL1 TR000445NCATS NIH HHS UL1-TR000445NCI NIH HHS CA 114766NCI NIH HHS CA142665NCI NIH HHS CA 21765NCI NIH HHS CA 36401NCI NIH HHS CA 98413NCI NIH HHS CA 98543NCI NIH HHS P30 CA021765NCI NIH HHS R01 CA036401NCI NIH HHS R01 CA142665NCI NIH HHS R37 CA036401NCI NIH HHS U10 CA098413NCI NIH HHS U10 CA098543NCI NIH HHS U10 CA180899NCI NIH HHS U24 CA114766NHGRI NIH HHS U01 HG004603NHGRI NIH HHS U01 HG04603NIGMS NIH HHS 5T32-GM007569NIGMS NIH HHS GM 115279NIGMS NIH HHS GM 92666NIGMS NIH HHS P50 GM115279NIGMS NIH HHS RC2 GM092618NIGMS NIH HHS RC2-GM092618NIGMS NIH HHS T32 GM007569NIGMS NIH HHS U01 GM092666NLM NIH HHS R01 LM010685NLM NIH HHS R01-LM010685
6 · The paper itself

Abstract

Glucocorticoids are important therapy for acute lymphoblastic leukemia (ALL) and their major adverse effect is osteonecrosis. Our goal was to identify genetic and nongenetic risk factors for osteonecrosis. We performed a genome-wide association study of single nucleotide polymorphisms (SNPs) in a discovery cohort comprising 2285 children with ALL, treated on the Children's Oncology Group AALL0232 protocol (NCT00075725), adjusting for covariates. The minor allele at SNP rs10989692 (near the glutamate receptor GRIN3A locus) was associated with osteonecrosis (hazard ratio = 2.03; P = 3.59 × 10(-7)). The association was supported by 2 replication cohorts, including 361 children with ALL on St. Jude's Total XV protocol (NCT00137111) and 309 non-ALL patients from Vanderbilt University's BioVU repository treated with glucocorticoids (odds ratio [OR] = 1.87 and 2.26; P = .063 and .0074, respectively). In a meta-analysis, rs10989692 was also highest ranked (P = 2.68 × 10(-8)), and the glutamate pathway was the top ranked pathway (P = 9.8 × 10(-4)). Osteonecrosis-associated glutamate receptor variants were also associated with other vascular phenotypes including cerebral ischemia (OR = 1.64; P = 2.5 × 10(-3)), and arterial embolism and thrombosis (OR = 1.88; P = 4.2 × 10(-3)). In conclusion, osteonecrosis was associated with inherited variations near glutamate receptor genes. Further understanding this association may allow interventions to decrease osteonecrosis. These trials are registered at www.clinicaltrials.gov as #NCT00075725 and #NCT00137111.

Indexed as

BiomarkersChildCohort StudiesDexamethasoneFemaleFollow-Up StudiesGenetic Predisposition to DiseaseGenome-Wide Association StudyGlucocorticoidsHumansMaleMeta-Analysis as TopicNeoplasm StagingOsteonecrosisPolymorphism, Single NucleotidePrecursor Cell Lymphoblastic Leukemia-LymphomaBiomarkersDexamethasoneGlucocorticoidsGRIN3A protein, humanReceptors, N-Methyl-D-Aspartate

Identifiers

PMID26265699
PMCPMC4600016
OpenAlexW1891689427

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.