Evidence map›Paper›PMID 26265469›Full record

ArticleThe Journal of biological chemistry2015

Bacterial rotary export ATPases are allosterically regulated by the nucleotide second messenger cyclic-di-GMP.

Eleftheria Trampari, Clare E M Stevenson, Richard H Little, Thomas Wilhelm, David M Lawson, Jacob G Malone

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
9.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 96 citations in OpenAlex.

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  19. The FlgN chaperone activates the NaCommunications biology · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Eleftheria TrampariFrom the Molecular Microbiology Department and.
Clare E M Stevensonthe Biological Chemistry Department, John Innes Centre, Norwich NR4 7UH, United Kingdom.
Richard H LittleFrom the Molecular Microbiology Department and.
Thomas Wilhelmthe Institute of Food Research, Norwich Research Park, Norwich NR4 7UA, United Kingdom, and.
David M Lawsonthe Biological Chemistry Department, John Innes Centre, Norwich NR4 7UH, United Kingdom.
Jacob G MaloneFrom the Molecular Microbiology Department and the School of Biological Sciences, University of East Anglia, Norwich NR4 7TJ, United Kingdom jacob.malone@jic.ac.uk.
John Innes Centre · GBQuadram Institute · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The widespread second messenger molecule cyclic di-GMP (cdG) regulates the transition from motile and virulent lifestyles to sessile, biofilm-forming ones in a wide range of bacteria. Many pathogenic and commensal bacterial-host interactions are known to be controlled by cdG signaling. Although the biochemistry of cyclic dinucleotide metabolism is well understood, much remains to be discovered about the downstream signaling pathways that induce bacterial responses upon cdG binding. As part of our ongoing research into the role of cdG signaling in plant-associated Pseudomonas species, we carried out an affinity capture screen for cdG binding proteins in the model organism Pseudomonas fluorescens SBW25. The flagella export AAA+ ATPase FliI was identified as a result of this screen and subsequently shown to bind specifically to the cdG molecule, with a KD in the low micromolar range. The interaction between FliI and cdG appears to be very widespread. In addition to FliI homologs from diverse bacterial species, high affinity binding was also observed for the type III secretion system homolog HrcN and the type VI ATPase ClpB2. The addition of cdG was shown to inhibit FliI and HrcN ATPase activity in vitro. Finally, a combination of site-specific mutagenesis, mass spectrometry, and in silico analysis was used to predict that cdG binds to FliI in a pocket of highly conserved residues at the interface between two FliI subunits. Our results suggest a novel, fundamental role for cdG in controlling the function of multiple important bacterial export pathways, through direct allosteric control of export ATPase proteins.

Indexed as

Gene Expression Regulation, BacterialAdenosine TriphosphatasesAllosteric SiteAmino Acid SequenceBacteriaBacterial ProteinsBinding SitesCyclic GMPFlagellaGene Expression RegulationL-Lactate DehydrogenaseMass SpectrometryModels, MolecularMolecular Sequence DataNucleotidesProtein BindingAdenosine TriphosphatasesBacterial Proteinsbis(3',5')-cyclic diguanylic acidCyclic GMPfliI protein, bacteriaL-Lactate DehydrogenaseNucleotidesProton-Translocating ATPasesPyruvate KinaseATPasebacterial signal transductioncyclic di-GMP (c-di-GMP)flagellumPseudomonassecond messengertype III secretion system (T3SS)

Identifiers

PMID26265469
PMCPMC4591828
OpenAlexW2265414501

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.