Evidence map›Paper›PMID 26265211›Full record

ArticleBreast cancer research : BCR2015

Chromosomal copy number alterations for associations of ductal carcinoma in situ with invasive breast cancer.

Anosheh Afghahi, Erna Forgó, Aya A Mitani, Manisha Desai, Sushama Varma, Tina Seto, Joseph Rigdon, Kristin C Jensen, Megan L Troxell, Scarlett Lin Gomez and 4 more

Open access · goldAbstract read
In one paragraph

Article in Breast cancer research : BCR, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.7field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Human Ductal Carcinoma In Situ: Advances and Future Perspectives.Cold Spring Harbor perspectives in medicine · 2023
    Review
  6. Ductal Carcinoma in Situ: Molecular Changes Accompanying Disease Progression.Journal of mammary gland biology and neoplasia · 2022
    Review
  7. Article
  8. Whole-Exome Sequencing Analysis of the Progression from Non-Low-Grade Ductal CarcinomaClinical cancer research : an official journal of the American Association for Cancer Research · 2020
    Observational
  9. Article
  10. Review
  11. Geometric characteristics of collagen have independent prognostic significance in breast ductal carcinoma in situ: an image analysis study.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2019
    Article
  12. Article
  13. Article
  14. Intratumoral Heterogeneity in Ductal Carcinoma In Situ: Chaos and Consequence.Journal of mammary gland biology and neoplasia · 2018
    Review
  15. Ductal CarcinomaFrontiers in oncology · 2017
    Review
  16. The Predictive Link between Matrix and Metastasis.Current opinion in chemical engineering · 2016
    Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Anosheh AfghahiDepartment of Medicine, Stanford University School of Medicine, 291 Campus Drive, Stanford, CA, 94305, USA. anosheh@stanford.edu.
Erna ForgóDepartment of Pathology, Stanford University School of Medicine, 300 Pasteur Drive, Stanford, CA, 94305, USA. eforgo@stanford.edu.
Aya A MitaniDepartment of Medicine, Stanford University School of Medicine, 291 Campus Drive, Stanford, CA, 94305, USA. amitani@bu.edu.
Manisha DesaiDepartment of Medicine, Stanford University School of Medicine, 291 Campus Drive, Stanford, CA, 94305, USA. manishad@stanford.edu.
Sushama VarmaDepartment of Pathology, Stanford University School of Medicine, 300 Pasteur Drive, Stanford, CA, 94305, USA. svarma@stanford.edu.
Tina SetoDepartment of Medicine, Stanford University School of Medicine, 291 Campus Drive, Stanford, CA, 94305, USA. tseto@stanford.edu.
Joseph RigdonDepartment of Medicine, Stanford University School of Medicine, 291 Campus Drive, Stanford, CA, 94305, USA. jrigdon@stanford.edu.
Kristin C JensenDepartment of Pathology, Stanford University School of Medicine, 300 Pasteur Drive, Stanford, CA, 94305, USA. kjensen1@stanford.edu.
Megan L TroxellDepartment of Pathology, Oregon Health & Science University, 3181 SW Sam Jackson Park Road, Portland, OR, 97239, USA. troxellm@ohsu.edu.
Scarlett Lin GomezDepartment of Health Research and Policy, Stanford University School of Medicine, 900 Blake Wilbur Drive, Stanford, CA, 94305, USA. Scarlett.Gomez@cpic.org.
Amar K DasDepartment of Medicine, Stanford University School of Medicine, 291 Campus Drive, Stanford, CA, 94305, USA. Amarendra.K.Das@dartmouth.edu.
Andrew H BeckDepartment of Pathology, Beth Israel Deaconess Medical Center and Harvard Medical School, 330 Brookline Avenue, Boston, MA, 02215, USA. abeck2@bidmc.harvard.edu.
Allison W KurianDepartment of Medicine, Stanford University School of Medicine, 291 Campus Drive, Stanford, CA, 94305, USA. akurian@stanford.edu.
Robert B WestDepartment of Pathology, Stanford University School of Medicine, 300 Pasteur Drive, Stanford, CA, 94305, USA. rbwest@stanford.edu.
Stanford University · USHarvard University · USOregon Health & Science University · US

Funding

Spectrum Stanford Center for clinical and Translational Research and EducationUL1TR001085 · NCATS · STANFORD UNIVERSITY · PI CULLEN, MARK RICHARD, GREENBERG, HARRY BERNARD · 2013 to 2017
$37.1M
CALIFORNIA'S PARTICIPATION IN THE NATIONAL CANCER PREVENTION AND CONTRO PROGRAMU58DP000807 · DP · PUBLIC HEALTH INSTITUTE · PI SNIPES, KURT P · 2007 to 2011
$22.5M
Stanford Center for Clinical and Translational Education and Research (SCCTER)UL1UL1RR025744 · NCRR · STANFORD UNIVERSITY · PI GREENBERG, HARRY BERNARD · 2008 to 2011
$22.4M
NCATS NIH HHS UL1 TR001085NCCDPHP CDC HHS U58 DP000807NCI NIH HHS HHSN261201000034CNCI NIH HHS HHSN261201000035CNCI NIH HHS HHSN261201000035INCI NIH HHS HHSN261201000140CNCRR NIH HHS UL1 RR025744
6 · The paper itself

Abstract

introductionScreening mammography has contributed to a significant increase in the diagnosis of ductal carcinoma in situ (DCIS), raising concerns about overdiagnosis and overtreatment. Building on prior observations from lineage evolution analysis, we examined whether measuring genomic features of DCIS would predict association with invasive breast carcinoma (IBC). The long-term goal is to enhance standard clinicopathologic measures of low- versus high-risk DCIS and to enable risk-appropriate treatment.

methodsWe studied three common chromosomal copy number alterations (CNA) in IBC and designed fluorescence in situ hybridization-based assay to measure copy number at these loci in DCIS samples. Clinicopathologic data were extracted from the electronic medical records of Stanford Cancer Institute and linked to demographic data from the population-based California Cancer Registry; results were integrated with data from tissue microarrays of specimens containing DCIS that did not develop IBC versus DCIS with concurrent IBC. Multivariable logistic regression analysis was performed to describe associations of CNAs with these two groups of DCIS.

resultsWe examined 271 patients with DCIS (120 that did not develop IBC and 151 with concurrent IBC) for the presence of 1q, 8q24 and 11q13 copy number gains. Compared to DCIS-only patients, patients with concurrent IBC had higher frequencies of CNAs in their DCIS samples. On multivariable analysis with conventional clinicopathologic features, the copy number gains were significantly associated with concurrent IBC. The state of two of the three copy number gains in DCIS was associated with a risk of IBC that was 9.07 times that of no copy number gains, and the presence of gains at all three genomic loci in DCIS was associated with a more than 17-fold risk (P = 0.0013).

conclusionsCNAs have the potential to improve the identification of high-risk DCIS, defined by presence of concurrent IBC. Expanding and validating this approach in both additional cross-sectional and longitudinal cohorts may enable improved risk stratification and risk-appropriate treatment in DCIS.

Indexed as

Chromosome AberrationsDNA Copy Number VariationsAdultAgedAged, 80 and overBiomarkers, TumorBreast NeoplasmsCarcinoma, Intraductal, NoninfiltratingFemaleGenetic Predisposition to DiseaseHumansIn Situ Hybridization, FluorescenceMiddle AgedNeoplasm GradingNeoplasm InvasivenessNeoplasm StagingBiomarkers, Tumor

Identifiers

PMID26265211
PMCPMC4534146
OpenAlexW2133324883

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.