Evidence map›Paper›PMID 26264665›Full record

ArticleNucleic acids research2015

Structure and primase-mediated activation of a bacterial dodecameric replicative helicase.

Alexandre Bazin, Mickaël V Cherrier, Irina Gutsche, Joanna Timmins, Laurent Terradot

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 44 citations in OpenAlex.

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  9. Nucleotide Binding Modes in a Motor Protein Revealed byChembiochem : a European journal of chemical biology · 2020
    Article
  10. Identification of the Unwinding Region in theFrontiers in microbiology · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Alexandre BazinCNRS, UMR 5086 Bases Moléculaires et Structurales de Systèmes Infectieux, Institut de Biologie et Chimie des Protéines, 7 Passage du Vercors, F-69367, Lyon, France. Université de Lyon, F-69622, Lyon, France; Université Claude Bernard Lyon 1, F-69622, Villeurbanne, France.
Mickaël V CherrierCNRS, UMR 5086 Bases Moléculaires et Structurales de Systèmes Infectieux, Institut de Biologie et Chimie des Protéines, 7 Passage du Vercors, F-69367, Lyon, France. Université de Lyon, F-69622, Lyon, France; Université Claude Bernard Lyon 1, F-69622, Villeurbanne, France.
Irina GutscheUnit of Virus Host-Cell Interactions, UJF-EMBL-CNRS, UMI3265, F-38044 Grenoble Cedex 9, France.
Joanna TimminsUniv. Grenoble Alpes, Institut de Biologie Structurale, F-38044 Grenoble, France CNRS, Institut de Biologie Structurale, F-38044 Grenoble, France CEA, Institut de Biologie Structurale, F-38044 Grenoble, France.
Laurent TerradotCNRS, UMR 5086 Bases Moléculaires et Structurales de Systèmes Infectieux, Institut de Biologie et Chimie des Protéines, 7 Passage du Vercors, F-69367, Lyon, France. Université de Lyon, F-69622, Lyon, France; Université Claude Bernard Lyon 1, F-69622, Villeurbanne, France laurent.terradot@ibcp.fr.
Centre National de la Recherche Scientifique · FRInstitut de Biologie et de Chimie des Protéines · FRUnit of Virus Host Cell Interactions · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Replicative helicases are essential ATPases that unwind DNA to initiate chromosomal replication. While bacterial replicative DnaB helicases are hexameric, Helicobacter pylori DnaB (HpDnaB) was found to form double hexamers, similar to some archaeal and eukaryotic replicative helicases. Here we present a structural and functional analysis of HpDnaB protein during primosome formation. The crystal structure of the HpDnaB at 6.7 Å resolution reveals a dodecameric organization consisting of two hexamers assembled via their N-terminal rings in a stack-twisted mode. Using fluorescence anisotropy we show that HpDnaB dodecamer interacts with single-stranded DNA in the presence of ATP but has a low DNA unwinding activity. Multi-angle light scattering and small angle X-ray scattering demonstrate that interaction with the DnaG primase helicase-binding domain dissociates the helicase dodecamer into single ringed primosomes. Functional assays on the proteins and associated complexes indicate that these single ringed primosomes are the most active form of the helicase for ATP hydrolysis, DNA binding and unwinding. These findings shed light onto an activation mechanism of HpDnaB by the primase that might be relevant in other bacteria and possibly other organisms exploiting dodecameric helicases for DNA replication.

Indexed as

Adenosine TriphosphatasesBacterial ProteinsDNADnaB HelicasesDNA PrimaseDNA, Single-StrandedEnzyme ActivationHelicobacter pyloriModels, MolecularProtein MultimerizationProtein Structure, TertiaryAdenosine TriphosphatasesBacterial ProteinsDNADnaB HelicasesDNA PrimaseDNA, Single-Stranded

Identifiers

PMID26264665
PMCPMC4787810
OpenAlexW2164355313

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.