Evidence map›Paper›PMID 26264192›Full record

ArticleNature communications2015

The photochemical mechanism of a B12-dependent photoreceptor protein.

Roger J Kutta, Samantha J O Hardman, Linus O Johannissen, Bruno Bellina, Hanan L Messiha, Juan Manuel Ortiz-Guerrero, Montserrat Elías-Arnanz, S Padmanabhan, Perdita Barran, Nigel S Scrutton and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 119 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Controllable gap junctions by vitamin BProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  5. Protein design accelerates the development and application of optogenetic tools.Computational and structural biotechnology journal · 2025
    Review
  6. Three-Color Protein Photolithography with Green, Red, and Far-Red Light.Small (Weinheim an der Bergstrasse, Germany) · 2024
    Article
  7. Review
  8. Photocobilins integrate BNature communications · 2024
    Article
  9. Article
  10. Non-native Intramolecular Radical Cyclization Catalyzed by a BAngewandte Chemie (International ed. in English) · 2023
    Article
  11. An Adenosylcobalamin Specific Whole-Cell Biosensor.Advanced healthcare materials · 2023
    Article
  12. Redox driven BNature communications · 2023
    Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. BScience advances · 2022
    Article
  18. Coenzyme BEnvironmental microbiology · 2022
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Roger J KuttaSchool of Chemistry, The University of Manchester, Oxford Road, Manchester M13 9PL, UK.
Samantha J O HardmanSYNBIOCHEM, Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester M1 7DN, UK.
Linus O JohannissenSYNBIOCHEM, Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester M1 7DN, UK.
Bruno BellinaSchool of Chemistry, The University of Manchester, Oxford Road, Manchester M13 9PL, UK.
Hanan L MessihaSYNBIOCHEM, Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester M1 7DN, UK.
Juan Manuel Ortiz-GuerreroDepartment of Genetics and Microbiology, Area of Genetics (Unidad Asociada al Instituto de Química Física-Consejo Superior de Investigaciones Científicas), Faculty of Biology, Universidad de Murcia, 30100 Murcia, Spain.
Montserrat Elías-ArnanzDepartment of Genetics and Microbiology, Area of Genetics (Unidad Asociada al Instituto de Química Física-Consejo Superior de Investigaciones Científicas), Faculty of Biology, Universidad de Murcia, 30100 Murcia, Spain.
S PadmanabhanInstituto de Química Física 'Rocasolano', Consejo Superior de Investigaciones Científicas, 28006 Madrid, Spain.
Perdita BarranSchool of Chemistry, The University of Manchester, Oxford Road, Manchester M13 9PL, UK.
Nigel S ScruttonSYNBIOCHEM, Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester M1 7DN, UK.
Alex R JonesSchool of Chemistry, The University of Manchester, Oxford Road, Manchester M13 9PL, UK.
University of Manchester · GBConsejo Superior de Investigaciones Científicas · ES

Funding

Biotechnology and Biological Sciences Research Council BB/L002655/1Biotechnology and Biological Sciences Research Council BB/M017702/1
6 · The paper itself

Abstract

The coenzyme B12-dependent photoreceptor protein, CarH, is a bacterial transcriptional regulator that controls the biosynthesis of carotenoids in response to light. On binding of coenzyme B12 the monomeric apoprotein forms tetramers in the dark, which bind operator DNA thus blocking transcription. Under illumination the CarH tetramer dissociates, weakening its affinity for DNA and allowing transcription. The mechanism by which this occurs is unknown. Here we describe the photochemistry in CarH that ultimately triggers tetramer dissociation; it proceeds via a cob(III)alamin intermediate, which then forms a stable adduct with the protein. This pathway is without precedent and our data suggest it is independent of the radical chemistry common to both coenzyme B12 enzymology and its known photochemistry. It provides a mechanistic foundation for the emerging field of B12 photobiology and will serve to inform the development of a new class of optogenetic tool for the control of gene expression.

Indexed as

Bacterial ProteinsChromatographyCobamidesComputer SimulationGene Expression Regulation, BacterialLightModels, ChemicalModels, MolecularPhotochemical ProcessesProtein ConformationSpectrum AnalysisThermus thermophilusBacterial ProteinscobamamideCobamides

Identifiers

PMID26264192
PMCPMC4557120
OpenAlexW1194791285

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.