Evidence map›Paper›PMID 26263895›Full record

ArticleBMC structural biology2015

New insights into the molecular mechanism of the Rab GTPase Sec4p activation.

Fabio C Rinaldi, Michael Packer, Ruth Collins

Open access · hybridAbstract read
In one paragraph

Article in BMC structural biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Roles of theJournal of fungi (Basel, Switzerland) · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Fabio C RinaldiDepartment of Molecular Medicine, Cornell University, Ithaca, NY, 14853, USA. fcr23@cornell.edu.
Michael PackerHonors Program in Undergraduate Studies, Cornell University, Ithaca, NY, 14853, USA. michaelpacker@fas.harvard.edu.
Ruth CollinsDepartment of Molecular Medicine, Cornell University, Ithaca, NY, 14853, USA. ruth.collins@cornell.edu.
Cornell University · US

Funding

Mechanisms of Rab Protein Activation and FunctionR01GM069596 · NIGMS · CORNELL UNIVERSITY ITHACA · PI COLLINS, RUTH N · 2005 to 2009
$1.4M
NIGMS NIH HHS 5R01GM069596NIGMS NIH HHS R01 GM069596
6 · The paper itself

Abstract

backgroundSec4p is a small monomeric Ras-related GTP-binding protein (23 kDa) that regulates polarized exocytosis in S. cerevisiae. In this study we examine the structural effects of a conserved serine residue in the P-loop corresponding to G12 in Ras.

resultsWe show that the Sec4p residue serine 29 forms a hydrogen bond with the nucleotide. Mutations of this residue have a different impact than equivalent mutations in Ras and can form stable associations with the exchange factor allowing us to elucidate the structure of a complex of Sec4p bound to the exchange factor Sec2p representing an early stage of the exchange reaction.

conclusionsOur structural investigation of the Sec4p-Sec2p complex reveals the role of the Sec2p coiled-coil domain in facilitating the fast kinetics of the exchange reaction. For Ras-family GTPases, single point mutations that impact the signaling state of the molecule have been well described however less structural information is available for equivalent mutations in the case of Rab proteins. Understanding the structural properties of mutants such as the one described here, provides useful insights into unique aspects of Rab GTPase function.

Indexed as

Amino Acid SequenceBinding SitesCrystallography, X-RayGuanine Nucleotide Exchange FactorsModels, MolecularMutationProtein MultimerizationProtein Structure, Secondaryrab GTP-Binding ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSerineGuanine Nucleotide Exchange Factorsrab GTP-Binding ProteinsSaccharomyces cerevisiae ProteinsSEC2 protein, S cerevisiaeSEC4 protein, S cerevisiaeSerine

Identifiers

PMID26263895
PMCPMC4531439
OpenAlexW1892404048

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.