Evidence map›Paper›PMID 26261983›Full record

ArticlePloS one2015

A Multi-Breed Genome-Wide Association Analysis for Canine Hypothyroidism Identifies a Shared Major Risk Locus on CFA12.

Matteo Bianchi, Stina Dahlgren, Jonathan Massey, Elisabeth Dietschi, Marcin Kierczak, Martine Lund-Ziener, Katarina Sundberg, Stein Istre Thoresen, Olle Kämpe, Göran Andersson and 7 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.1field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 28 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 8 institutions in 5 countries.

Matteo BianchiScience for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden.
Stina DahlgrenDepartment of Basic Sciences and Aquatic Medicine, Norwegian University of Life Sciences, Oslo, Norway.
Jonathan MasseyCentre for Integrated Genomic Medical Research, The University of Manchester, Manchester Academic Health Science Centre, Manchester, United Kingdom.
Elisabeth DietschiInstitute of Genetics, Vetsuisse Faculty, University of Bern, Bern, Switzerland.
Marcin KierczakScience for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden.
Martine Lund-ZienerDepartment of Basic Sciences and Aquatic Medicine, Norwegian University of Life Sciences, Oslo, Norway.
Katarina SundbergDepartment of Animal Breeding and Genetics, Swedish University of Agricultural Sciences, Uppsala, Sweden.
Stein Istre ThoresenDepartment of Basic Sciences and Aquatic Medicine, Norwegian University of Life Sciences, Oslo, Norway.
Olle KämpeDepartment of Medicine (Solna), Karolinska Institutet, Stockholm, Sweden.
Göran AnderssonDepartment of Animal Breeding and Genetics, Swedish University of Agricultural Sciences, Uppsala, Sweden.
William E R OllierCentre for Integrated Genomic Medical Research, The University of Manchester, Manchester Academic Health Science Centre, Manchester, United Kingdom.
Åke HedhammarDepartment of Clinical Sciences, Swedish University of Agricultural Sciences, Uppsala, Sweden.
Tosso LeebInstitute of Genetics, Vetsuisse Faculty, University of Bern, Bern, Switzerland.
Kerstin Lindblad-TohScience for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden; Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
Lorna J KennedyCentre for Integrated Genomic Medical Research, The University of Manchester, Manchester Academic Health Science Centre, Manchester, United Kingdom.
Frode LingaasDepartment of Basic Sciences and Aquatic Medicine, Norwegian University of Life Sciences, Oslo, Norway.
Gerli Rosengren PielbergScience for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden.
Norwegian University of Life Sciences · NOSwedish University of Agricultural Sciences · SEManchester Academic Health Science Centre · GBScience for Life Laboratory · SEUniversity of Bern · CHUppsala University · SEKarolinska Institutet · SEUniversity of Manchester · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hypothyroidism is a complex clinical condition found in both humans and dogs, thought to be caused by a combination of genetic and environmental factors. In this study we present a multi-breed analysis of predisposing genetic risk factors for hypothyroidism in dogs using three high-risk breeds--the Gordon Setter, Hovawart and the Rhodesian Ridgeback. Using a genome-wide association approach and meta-analysis, we identified a major hypothyroidism risk locus shared by these breeds on chromosome 12 (p = 2.1x10(-11)). Further characterisation of the candidate region revealed a shared ~167 kb risk haplotype (4,915,018-5,081,823 bp), tagged by two SNPs in almost complete linkage disequilibrium. This breed-shared risk haplotype includes three genes (LHFPL5, SRPK1 and SLC26A8) and does not extend to the dog leukocyte antigen (DLA) class II gene cluster located in the vicinity. These three genes have not been identified as candidate genes for hypothyroid disease previously, but have functions that could potentially contribute to the development of the disease. Our results implicate the potential involvement of novel genes and pathways for the development of canine hypothyroidism, raising new possibilities for screening, breeding programmes and treatments in dogs. This study may also contribute to our understanding of the genetic etiology of human hypothyroid disease, which is one of the most common endocrine disorders in humans.

Indexed as

Genetic LociGenetic Predisposition to DiseaseGenome-Wide Association StudyAnimalsBreedingDog DiseasesDogsGenotypeHaplotypesHypothyroidismPhenotypePolymorphism, Single Nucleotide

Identifiers

PMID26261983
PMCPMC4532498
OpenAlexW2160976645

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.