Evidence map›Paper›PMID 26261397›Full record

ArticlePhysiology and molecular biology of plants : an international journal of functional plant biology2015

Mining expressed sequence tags of rapeseed (Brassica napus L.) to predict the drought responsive regulatory network.

Roohollah Shamloo-Dashtpagerdi, Hooman Razi, Esmaeil Ebrahimie

Abstract read
In one paragraph

Article in Physiology and molecular biology of plants : an international journal of functional plant biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

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9citing papers in PubMed, 1 pooled it
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1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  4. Evaluation of protein's interaction and the regulatory network of some drought-responsive genes in Canola under drought and re-watering conditions.Physiology and molecular biology of plants : an international journal of functional plant biology · 2023
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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

3 authors.

Roohollah Shamloo-DashtpagerdiDepartment of Crop Production and Plant Breeding, College of Agriculture, Shiraz University, Shiraz, Iran.
Hooman RaziDepartment of Crop Production and Plant Breeding, College of Agriculture, Shiraz University, Shiraz, Iran.
Esmaeil EbrahimieDepartment of Crop Production and Plant Breeding, College of Agriculture, Shiraz University, Shiraz, Iran ; Institute of Biotechnology, Shiraz University, Shiraz, Iran ; School of Biological Sciences, The University of Adelaide, Adelaide, Australia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

It is of great significance to understand the regulatory mechanisms by which plants deal with drought stress. Two EST libraries derived from rapeseed (Brassica napus) leaves in non-stressed and drought stress conditions were analyzed in order to obtain the transcriptomic landscape of drought-exposed B. napus plants, and also to identify and characterize significant drought responsive regulatory genes and microRNAs. The functional ontology analysis revealed a substantial shift in the B. napus transcriptome to govern cellular drought responsiveness via different stress-activated mechanisms. The activity of transcription factor and protein kinase modules generally increased in response to drought stress. The 26 regulatory genes consisting of 17 transcription factor genes, eight protein kinase genes and one protein phosphatase gene were identified showing significant alterations in their expressions in response to drought stress. We also found the six microRNAs which were differentially expressed during drought stress supporting the involvement of a post-transcriptional level of regulation for B. napus drought response. The drought responsive regulatory network shed light on the significance of some regulatory components involved in biosynthesis and signaling of various plant hormones (abscisic acid, auxin and brassinosteroids), ubiquitin proteasome system, and signaling through Reactive Oxygen Species (ROS). Our findings suggested a complex and multi-level regulatory system modulating response to drought stress in B. napus.

Indexed as

Brassica napusDrought stressEST analysisMicroRNAProtein kinasesTranscription factors

Identifiers

PMID26261397
PMCPMC4524867

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.