Evidence map›Paper›PMID 26261348›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

The opportunistic marine pathogen Vibrio parahaemolyticus becomes virulent by acquiring a plasmid that expresses a deadly toxin.

Chung-Te Lee, I-Tung Chen, Yi-Ting Yang, Tzu-Ping Ko, Yun-Tzu Huang, Jiun-Yan Huang, Ming-Fen Huang, Shin-Jen Lin, Chien-Yu Chen, Shih-Shun Lin and 7 more

Erratum issuedOpen access · bronzeAbstract readComparative Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 207 papers.

0numbers the graph read from it
0cells of the map it votes in
207citing papers in PubMed
18.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

207 citing papers in PubMed, 588 citations in OpenAlex.

  1. Review
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  4. Biochemistry and biophysics reports · 2026
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  13. Dietary and water probiotics enhance immunity, modulate microbiota, and increase survival of Penaeus vannamei challenged with V. parahaemolyticus.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2026
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  15. NativePathogens (Basel, Switzerland) · 2026
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  16. Review
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  18. T3SS1 accessory protein geneFrontiers in cellular and infection microbiology · 2026
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147 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 2 countries.

Chung-Te LeeInstitute of Bioinformatics and Biosignal Transduction, College of Bioscience and Biotechnology, National Cheng Kung University, Tainan 701, Taiwan; Department of Microbiology and Immunology, College of Medicine, National Cheng Kung University, Tainan 701, Taiwan;
I-Tung ChenInstitute of Bioinformatics and Biosignal Transduction, College of Bioscience and Biotechnology, National Cheng Kung University, Tainan 701, Taiwan; Department of Life Science, National Taiwan University, Taipei 104, Taiwan;
Yi-Ting YangInstitute of Bioinformatics and Biosignal Transduction, College of Bioscience and Biotechnology, National Cheng Kung University, Tainan 701, Taiwan; Department of Life Science, National Taiwan University, Taipei 104, Taiwan;
Tzu-Ping KoInstitute of Biological Chemistry, Academia Sinica, Taipei 115, Taiwan;
Yun-Tzu HuangInstitute of Bioinformatics and Biosignal Transduction, College of Bioscience and Biotechnology, National Cheng Kung University, Tainan 701, Taiwan;
Jiun-Yan HuangInstitute of Bioinformatics and Biosignal Transduction, College of Bioscience and Biotechnology, National Cheng Kung University, Tainan 701, Taiwan;
Ming-Fen HuangGraduate Institute of Translational Medicine, College of Medical Science and Technology, Taipei Medical University, Taipei 110, Taiwan;
Shin-Jen LinInstitute of Bioinformatics and Biosignal Transduction, College of Bioscience and Biotechnology, National Cheng Kung University, Tainan 701, Taiwan;
Chien-Yu ChenGenome and Systems Biology Degree Program, National Taiwan University and Academia Sinica, Taipei 115, Taiwan; Department of Bio-Industrial Mechatronics Engineering, National Taiwan University, Taipei 104, Taiwan;
Shih-Shun Lin
Shih-Shuen LinInstitute of Biotechnology, National Taiwan University, Taipei 104, Taiwan;
Donald V LightnerAquaculture Pathology Laboratory, School of Animal and Comparative Biomedical Sciences, University of Arizona, Tucson, AZ 85721;
Han-Ching WangInstitute of Biotechnology, College of Bioscience and Biotechnology, National Cheng Kung University, Tainan 701, Taiwan;
Andrew H-J WangInstitute of Biological Chemistry, Academia Sinica, Taipei 115, Taiwan;
Hao-Ching WangGraduate Institute of Translational Medicine, College of Medical Science and Technology, Taipei Medical University, Taipei 110, Taiwan; gracelow@mail.ncku.edu.tw h061453@mail.ncku.edu.tw wanghc@tmu.edu.tw.
Lien-I HorDepartment of Microbiology and Immunology, College of Medicine, National Cheng Kung University, Tainan 701, Taiwan; gracelow@mail.ncku.edu.tw h061453@mail.ncku.edu.tw wanghc@tmu.edu.tw.
Chu-Fang LoInstitute of Bioinformatics and Biosignal Transduction, College of Bioscience and Biotechnology, National Cheng Kung University, Tainan 701, Taiwan; Department of Life Science, National Taiwan University, Taipei 104, Taiwan; Center of Bioscience and Biotechnology, National Cheng Kung University, Tainan 701, Taiwan gracelow@mail.ncku.edu.tw h061453@mail.ncku.edu.tw wanghc@tmu.edu.tw.
National Cheng Kung University · TWNational Taiwan University · TWInstitute of Biological Chemistry, Academia Sinica · TWTaipei Medical University · TWAcademia Sinica · TWUniversity of Arizona · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Acute hepatopancreatic necrosis disease (AHPND) is a severe, newly emergent penaeid shrimp disease caused by Vibrio parahaemolyticus that has already led to tremendous losses in the cultured shrimp industry. Until now, its disease-causing mechanism has remained unclear. Here we show that an AHPND-causing strain of V. parahaemolyticus contains a 70-kbp plasmid (pVA1) with a postsegregational killing system, and that the ability to cause disease is abolished by the natural absence or experimental deletion of the plasmid-encoded homologs of the Photorhabdus insect-related (Pir) toxins PirA and PirB. We determined the crystal structure of the V. parahaemolyticus PirA and PirB (PirA(vp) and PirB(vp)) proteins and found that the overall structural topology of PirA(vp)/PirB(vp) is very similar to that of the Bacillus Cry insecticidal toxin-like proteins, despite the low sequence identity (<10%). This structural similarity suggests that the putative PirAB(vp) heterodimer might emulate the functional domains of the Cry protein, and in particular its pore-forming activity. The gene organization of pVA1 further suggested that pirAB(vp) may be lost or acquired by horizontal gene transfer via transposition or homologous recombination.

Indexed as

AnimalsBacterial ProteinsBacterial ToxinsConjugation, GeneticDNA, BacterialGenes, BacterialModels, MolecularMolecular Sequence DataOpen Reading FramesPenaeidaePlasmidsPorinsProtein ConformationSequence Homology, Nucleic AcidVibrio parahaemolyticusVirulenceBacterial ProteinsBacterial ToxinsDNA, BacterialPorinsAHPNDPir toxinshrimpVibrio parahaemolyticusvirulence plasmid

Identifiers

PMID26261348
PMCPMC4553777
OpenAlexW1897635105

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.