Evidence map›Paper›PMID 26261346›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Glassin, a histidine-rich protein from the siliceous skeletal system of the marine sponge Euplectella, directs silica polycondensation.

Katsuhiko Shimizu, Taro Amano, Md Rezaul Bari, James C Weaver, Jiro Arima, Nobuhiro Mori

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.8field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 75 citations in OpenAlex.

  1. Co-option of Lysosomal Machinery for Sponge Biosilicification.bioRxiv : the preprint server for biology · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Nanoengineered Silica-Based Biomaterials for Regenerative Medicine.International journal of molecular sciences · 2024
    Review
  9. Article
  10. Untapped Potential of Deep Eutectic Solvents for the Synthesis of Bioinspired Inorganic-Organic Materials.Chemistry of materials : a publication of the American Chemical Society · 2023
    Review
  11. Article
  12. Article
  13. Article
  14. The genome of the reef-building glass spongeRoyal Society open science · 2023
    Article
  15. Article
  16. Arrested in Glass: Actin within Sophisticated Architectures of Biosilica in Sponges.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2022
    Article
  17. Article
  18. Calcite Nanotuned Chitinous Skeletons of GiantInternational journal of molecular sciences · 2021
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Katsuhiko ShimizuDivision of Regional Contribution and Lifelong Learning, Organization for Regional Industrial Academic Cooperation, Tottori University, Tottori 680-8550, Japan; kshimizu@cjrd.tottori-u.ac.jp.
Taro AmanoDepartment of Agricultural, Biological and Environmental Science, Faculty of Agriculture, Tottori University, Tottori 680-8553, Japan;
Md Rezaul BariDepartment of Agricultural, Biological and Environmental Science, Faculty of Agriculture, Tottori University, Tottori 680-8553, Japan;
James C WeaverWyss Institute for Biologically Inspired Engineering, Harvard University, Cambridge, MA 01238.
Jiro ArimaDepartment of Agricultural, Biological and Environmental Science, Faculty of Agriculture, Tottori University, Tottori 680-8553, Japan;
Nobuhiro MoriDepartment of Agricultural, Biological and Environmental Science, Faculty of Agriculture, Tottori University, Tottori 680-8553, Japan;
Tottori University · JPHarvard University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The hexactinellids are a diverse group of predominantly deep sea sponges that synthesize elaborate fibrous skeletal systems of amorphous hydrated silica. As a representative example, members of the genus Euplectella have proved to be useful model systems for investigating structure-function relationships in these hierarchically ordered siliceous network-like composites. Despite recent advances in understanding the mechanistic origins of damage tolerance in these complex skeletal systems, the details of their synthesis have remained largely unexplored. Here, we describe a previously unidentified protein, named "glassin," the main constituent in the water-soluble fraction of the demineralized skeletal elements of Euplectella. When combined with silicic acid solutions, glassin rapidly accelerates silica polycondensation over a pH range of 6-8. Glassin is characterized by high histidine content, and cDNA sequence analysis reveals that glassin shares no significant similarity with any other known proteins. The deduced amino acid sequence reveals that glassin consists of two similar histidine-rich domains and a connecting domain. Each of the histidine-rich domains is composed of three segments: an amino-terminal histidine and aspartic acid-rich sequence, a proline-rich sequence in the middle, and a histidine and threonine-rich sequence at the carboxyl terminus. Histidine always forms HX or HHX repeats, in which most of X positions are occupied by glycine, aspartic acid, or threonine. Recombinant glassin reproduces the silica precipitation activity observed in the native proteins. The highly modular composition of glassin, composed of imidazole, acidic, and hydroxyl residues, favors silica polycondensation and provides insights into the molecular mechanisms of skeletal formation in hexactinellid sponges.

Indexed as

Amino AcidsAmino Acid SequenceAnimalsAspartic AcidBinding SitesCloning, MolecularDNA, ComplementaryElectrophoresis, Polyacrylamide GelEpitopesGeographyHistidineHistidine-Rich GlycoproteinHydrogen-Ion ConcentrationHydrolysisMolecular Sequence DataPeptidesAmino AcidsAspartic AcidDNA, ComplementaryEpitopesHistidineHistidine-Rich GlycoproteinPeptidesProlineProteinsRecombinant ProteinsSilicon DioxideThreoninebiomineralfusion materialsorganic–inorganic compositePoriferasilicon dioxide

Identifiers

PMID26261346
PMCPMC4577155
OpenAlexW1948515371

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.