Evidence map›Paper›PMID 26261309›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Disease-associated mutation in SRSF2 misregulates splicing by altering RNA-binding affinities.

Jian Zhang, Yen K Lieu, Abdullah M Ali, Alex Penson, Kathryn S Reggio, Raul Rabadan, Azra Raza, Siddhartha Mukherjee, James L Manley

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 163 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
163citing papers in PubMed, 1 pooled it
9.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

163 citing papers in PubMed, 1 synthesis or guideline pooled it, 206 citations in OpenAlex.

  1. Alternative splicing and cancer: a systematic review.Signal transduction and targeted therapy · 2021
    Pooled it
  2. Article
  3. TargetingGenes & development · 2026
    Article
  4. Review
  5. Article
  6. Non-Enzymatic MGO-Glycation of SRSF2 Drives RNA Mis-Splicing.Journal of the American Chemical Society · 2026
    Article
  7. Article
  8. Article
  9. Inactivation ofLife (Basel, Switzerland) · 2026
    Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. RNA Splicing as a Therapeutic Target in Cancer.Annual review of pharmacology and toxicology · 2026
    Review
  15. Review
  16. Review
  17. Article
  18. Review
  19. Review
  20. Article

103 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Jian ZhangDepartment of Biological Sciences, Columbia University, New York, NY 10027;
Yen K LieuIrving Cancer Research Center, Columbia University, New York, NY 10032;
Abdullah M AliIrving Cancer Research Center, Columbia University, New York, NY 10032;
Alex PensonDepartment of Systems Biology, Columbia University, New York, NY 10032;
Kathryn S ReggioDepartment of Biological Sciences, Columbia University, New York, NY 10027;
Raul RabadanDepartment of Systems Biology, Columbia University, New York, NY 10032; Department of Biomedical Informatics, Columbia University, New York, NY 10032;
Azra RazaIrving Cancer Research Center, Columbia University, New York, NY 10032; Division of Hematology and Oncology, Department of Medicine, Columbia University, New York, NY 10032.
Siddhartha MukherjeeIrving Cancer Research Center, Columbia University, New York, NY 10032; Division of Hematology and Oncology, Department of Medicine, Columbia University, New York, NY 10032 sm3252@cumc.columbia.edu jlm2@columbia.edu.
James L ManleyDepartment of Biological Sciences, Columbia University, New York, NY 10027; sm3252@cumc.columbia.edu jlm2@columbia.edu.
Columbia University · USCancer Research Center · US

Funding

MECHANISMS OF ALTERNATIVE SPLICING OF PRE MRNAR01GM048259 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI MANLEY, JAMES L. · 1992 to 2015
$5.2M
NIGMS NIH HHS R01 GM048259
6 · The paper itself

Abstract

Serine/arginine-rich splicing factor 2 (SRSF2) is an RNA-binding protein that plays important roles in splicing of mRNA precursors. SRSF2 mutations are frequently found in patients with myelodysplastic syndromes and certain leukemias, but how these mutations affect SRSF2 function has only begun to be examined. We used clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated protein-9 nuclease to introduce the P95H mutation to SRSF2 in K562 leukemia cells, generating an isogenic model so that splicing alterations can be attributed solely to mutant SRSF2. We found that SRSF2 (P95H) misregulates 548 splicing events (<1% of total). Of these events, 374 involved the inclusion of cassette exons, and the inclusion was either increased (206) or decreased (168). We detected a specific motif (UCCA/UG) enriched in the more-included exons and a distinct motif (UGGA/UG) in the more-excluded exons. RNA gel shift assays showed that a mutant SRSF2 derivative bound more tightly than its wild-type counterpart to RNA sites containing UCCAG but bound less tightly to UGGAG sites. Thus in most cases the pattern of exon inclusion or exclusion correlated with stronger or weaker RNA binding, respectively. We further show that the P95H mutation does not affect other functions of SRSF2, i.e., protein-protein interactions with key splicing factors. Our results thus demonstrate that the P95H mutation positively or negatively alters the binding affinity of SRSF2 for cognate RNA sites in target transcripts, leading to misregulation of exon inclusion. Our findings shed light on the mechanism of the disease-associated SRSF2 mutation in splicing regulation and also reveal a group of misspliced mRNA isoforms for potential therapeutic targeting.

Indexed as

MutationRNA SplicingBinding SitesCRISPR-Associated ProteinsExonsHumansNuclear ProteinsRibonucleoproteinsRNASerine-Arginine Splicing FactorsCRISPR-Associated ProteinsNuclear ProteinsRibonucleoproteinsRNASerine-Arginine Splicing FactorsSRSF2 protein, humanleukemiamyelodysplastic syndromespre-mRNA splicingserine/arginine-rich proteinsspliceosome

Identifiers

PMID26261309
PMCPMC4553800
OpenAlexW1915661113

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.