Evidence map›Paper›PMID 26260850›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2015

Development of a diagnostic co-dominant marker for stem rust resistance gene Sr47 introgressed from Aegilops speltoides into durum wheat.

Guotai Yu, Daryl L Klindworth, Timothy L Friesen, Justin D Faris, Shaobin Zhong, Jack B Rasmussen, Steven S Xu

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In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.6field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Physical mapping of DNA markers linked to stem rust resistance gene Sr47 in durum wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017
    Article
  3. Fine mapping of the stem rust resistance gene SrTA10187.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2016
    Article
4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Guotai YuDepartment of Plant Pathology, North Dakota State University, Fargo, ND, 58108, USA.
Daryl L KlindworthCereal Crops Research Unit, Red River Valley Agricultural Research Center, USDA-ARS, 1605 Albrecht Blvd. North, Fargo, ND, 58102-2765, USA.
Timothy L FriesenCereal Crops Research Unit, Red River Valley Agricultural Research Center, USDA-ARS, 1605 Albrecht Blvd. North, Fargo, ND, 58102-2765, USA.
Justin D FarisCereal Crops Research Unit, Red River Valley Agricultural Research Center, USDA-ARS, 1605 Albrecht Blvd. North, Fargo, ND, 58102-2765, USA.
Shaobin ZhongDepartment of Plant Pathology, North Dakota State University, Fargo, ND, 58108, USA.
Jack B RasmussenDepartment of Plant Pathology, North Dakota State University, Fargo, ND, 58108, USA.
Steven S XuCereal Crops Research Unit, Red River Valley Agricultural Research Center, USDA-ARS, 1605 Albrecht Blvd. North, Fargo, ND, 58102-2765, USA. steven.xu@ars.usda.gov.
North Dakota State University · USAgricultural Research Service · USEdward T. Schafer Agricultural Research Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

key messageA robust and diagnostic STS marker for stem rust resistance gene Sr47 was developed and validated for marker-assisted selection. Stem rust (caused by Puccinia graminis f. sp. tritici, Pgt) resistance gene Sr47, originally transferred from Aegilops speltoides to durum wheat (Triticum turgidum subsp. durum) line DAS15, confers a high level of resistance to Pgt race TTKSK (Ug99). Recently, the durum Rusty 5D(5B) substitution line was used to reduce the Ae. speltoides segment, and the resulting lines had Sr47 on small Ae. speltoides segments on wheat chromosome arm 2BL. The objective of this study was to develop a robust marker for marker-assisted selection of Sr47. A 200-kb segment of the Brachypodium distachyon genome syntenic with the Sr47 region was used to identify wheat expressed sequence tags (ESTs) homologous to the B. distachyon genes. The wheat EST sequences were then used to develop sequence-tagged site (STS) markers. By analyzing the markers for polymorphism between Rusty and DAS15, we identified a co-dominant STS marker, designated as Xrwgs38, which amplified 175 and 187 bp fragments from wheat chromosome 2B and Ae. speltoides chromosome 2S segments, respectively. The marker co-segregated with the Ae. speltoides segments carrying Sr47 in the families from four BC2F1 plants, including the parent plants for durum lines RWG35 and RWG36 with the pedigree of Rusty/3/Rusty 5D(5B)/DAS15//47-1 5D(5B). Analysis of 62 durum and common wheat cultivars/lines lacking the Sr47 segment indicated that they all possessed the 175-bp allele of Xrwgs38, indicating that it was diagnostic for the small Ae. speltoides segment carrying Sr47. This study demonstrated that Xrwgs38 will facilitate the selection of Sr47 in durum and common wheat breeding.

Indexed as

Genes, PlantGenetic MarkersBasidiomycotaDisease ResistanceExpressed Sequence TagsGenotypePlant BreedingPlant DiseasesPoaceaeSelection, GeneticTriticumGenetic Markers

Identifiers

PMID26260850
OpenAlexW1192176264

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.