Evidence map›Paper›PMID 26260319›Full record

ArticleBiochemical and biophysical research communications2015

Identification of novel regulatory NFAT and TFII-I binding elements in the calbindin-D28k promoter in response to serum deprivation.

Asghar Hajibeigi, Elhadji M Dioum, Jianfei Guo, Orhan K Öz

Abstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Cytosolic CaCold Spring Harbor perspectives in biology · 2020
    Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Asghar Hajibeigi *Department of Radiology, UT Southwestern Medical Center, Dallas, Texas 75390-9153, USA.
Elhadji M Dioum *Department of Pharmacology, UT Southwestern Medical Center, Dallas, Texas 75390-9153, USA.
Jianfei GuoDepartment of Radiology, UT Southwestern Medical Center, Dallas, Texas 75390-9153, USA.
Orhan K ÖzDepartment of Radiology, UT Southwestern Medical Center, Dallas, Texas 75390-9153, USA.
Southwestern Medical Center · US

Funding

UT Southwestern O'Brien Kidney Research Core CenterP30DK079328 · NIDDK · UT SOUTHWESTERN MEDICAL CENTER · PI MOE, ORSON W · 2007 to 2021
$16.9M
RENAL BASIS OF HYPOCITRATURIAP01DK020543 · NIDDK · UT SOUTHWESTERN MEDICAL CENTER · PI HUANG, CHOU-LONG · 1986 to 2008
$12.7M
NIDDK NIH HHS P01 DK020543NIDDK NIH HHS P01DK20543NIDDK NIH HHS P30 DK079328
6 · The paper itself

Abstract

Calbindin-D28k, a key regulator of calcium homeostasis plays a cytoprotective role in various tissues. We used serum free (SFM) and charcoal stripped serum (csFBS) culture media as models of cellular stress to modulate calbindin D28k expression and identify regulatory cis-elements and trans-acting factors in kidney and beta cells. The murine calbindin-D28k promoter activity was significantly upregulated under SFM or csFBS condition. Promoter analysis revealed evolutionary conserved regulatory cis-elements and deletion of 23 nt from +117/+139 as critical for basal transcription. Bioinformatics analysis of the promoter revealed conserved NFAT and TFII regulators elements. Forced expression of NFAT stimulated promoter activity. Inhibition of NFAT transcriptional activity by FK506 attenuated calbindin-D28k expression. TFII-I was shown to be necessary for basal promoter activity and to act cooperatively with NFAT. Using chromatin immunoprecipitation (ChIP) assays, NFAT was shown to bind to both proximal and distal promoter regions. ChIP assays also revealed recruitment of TFII to the -36/+139 region. Knockdown of TFII-I decreased promoter activity. In summary, calbindin-D28k expression during serum deprivation is partly regulated by NFAT and TF-II. This regulation may be important in vivo during ischemia and growth factor withdrawal to regulate cellular function and maintenance.

Indexed as

AnimalsBase SequenceBinding SitesCalbindin 1Culture Media, Serum-FreeDogsHEK293 CellsHeLa CellsHumansMadin Darby Canine Kidney CellsMolecular Sequence DataNFATC Transcription FactorsPromoter Regions, GeneticProtein BindingRegulatory Elements, TranscriptionalTranscription Factors, TFIICalbindin 1Culture Media, Serum-FreeGTF2I protein, humanNFATC Transcription FactorsTranscription Factors, TFIIApoptosisCalbindin-D28kCalcium binding proteinsNFAT transcription factorsSerum deprivationTFII-I

Identifiers

PMID26260319
PMCPMC4595168
OpenAlexW1055171259

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.